Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00830
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase, p...    31   0.82 
At2g30390.1 68415.m03698 ferrochelatase II identical to Swiss-Pr...    29   2.5  
At4g18510.1 68417.m02744 Clavata3 / ESR-Related-2 (CLE2) CLAVATA...    29   3.3  
At3g11390.1 68416.m01387 DC1 domain-containing protein contains ...    29   4.4  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    28   5.8  
At2g40085.1 68415.m04925 expressed protein                             28   5.8  
At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA) iden...    28   7.6  
At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nea...    28   7.6  
At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nea...    28   7.6  

>At1g34430.1 68414.m04277 dihydrolipoamide S-acetyltransferase,
           putative similar to dihydrolipoamide S-acetyltransferase
           (LTA2) [Arabidopsis thaliana] GI:5881963; contains Pfam
           profiles PF00198: 2-oxo acid dehydrogenases
           acyltransferase (catalytic domain), PF00364:
           Biotin-requiring enzyme, PF02817: e3 binding domain
          Length = 465

 Score = 31.1 bits (67), Expect = 0.82
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -3

Query: 146 EVLRSGGGMRARGAFRPVRGGPGLELADIIP 54
           E + +GGG++A  A + V   PG+EL  ++P
Sbjct: 218 EAVAAGGGVQAAVAVKEVVAAPGVELGSVVP 248


>At2g30390.1 68415.m03698 ferrochelatase II identical to
           Swiss-Prot:O04921 ferrochelatase II, chloroplast
           precursor (EC 4.99.1.1) (Protoheme ferro-lyase) (Heme
           synthetase) [Arabidopsis thaliana]
          Length = 512

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 17/40 (42%), Positives = 21/40 (52%)
 Frame = +3

Query: 150 SRTSPLMNCFRQLRHHFPALESTRRLPKNRAPLRAELAAS 269
           S+ S +M+C R     F A  S R L K+  PLRA L  S
Sbjct: 35  SQRSVVMHCTRLPFEAFAATSSNRLLGKHSLPLRAALVTS 74


>At4g18510.1 68417.m02744 Clavata3 / ESR-Related-2 (CLE2)
           CLAVATA3/ESR-Related-2 (CLE2)
          Length = 75

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = -2

Query: 264 RRALLVEGLGSSASGGSTPALENDDEAGGNSSSEEKSGLGGP 139
           R  + V GL  S    S P +E+D  AG +  S E+   GGP
Sbjct: 30  RVGVKVRGLSPSIEATS-PTVEDDQAAGSHGKSPERLSPGGP 70


>At3g11390.1 68416.m01387 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 710

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +2

Query: 407 SRQPYTLHRCPQLRRTKSPNKKCFLPLACNVLPSLCN 517
           +R  + LH  P LR T SP + C+ P+        CN
Sbjct: 326 TRHEHRLHHTPYLRSTISPCRICYQPVDIKYGQYYCN 362


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 237 GSSASGGSTPALENDDEAGGNSSSEEKSGL 148
           GSS+S GSTP+L     +G  +SS    G+
Sbjct: 281 GSSSSAGSTPSLFASSSSGATTSSPSPFGV 310


>At2g40085.1 68415.m04925 expressed protein
          Length = 93

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
 Frame = +2

Query: 212 VDPPLAEEPSPSTSRARRL----HQACPLQRWLVAVAHGAFGQLSQLHRHCRRLTRKARA 379
           VDPPL +E SPS S+ R +      A P +  L+     A  +L +L      + R+   
Sbjct: 13  VDPPLYDEASPSASQRRPVVIAADAAPPAENHLIQRIQRALVELRELRNQFNAILRELEF 72

Query: 380 HV 385
            V
Sbjct: 73  EV 74


>At4g16830.1 68417.m02540 nuclear RNA-binding protein (RGGA)
           identical to nuclear RNA binding protein GI:6492264 from
           [Arabidopsis thaliana]
          Length = 355

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -3

Query: 137 RSGGGMRARGAFRPVRGGPG 78
           R GGG   RG+FR   GGPG
Sbjct: 111 RRGGGGAPRGSFRGEGGGPG 130


>At2g22090.2 68415.m02624 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 347

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 249 VEGLGSSASGGSTPALENDDEAGGNSSSEEKSGLGGPS 136
           +  LGS   G S P+   D +AGG   + + S  GG S
Sbjct: 298 LSALGSYFRGQSLPSTYPDSDAGGKRGTGKDSDAGGSS 335


>At2g22090.1 68415.m02623 UBP1 interacting protein 1a (UBA1a) nearly
           identical to UBP1 interacting protein 1a [Arabidopsis
           thaliana] GI:19574236; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM); based on cDNA of partial mRNA for UBP1
           interacting protein 1a (uba1a) GI:19574235
          Length = 343

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = -2

Query: 249 VEGLGSSASGGSTPALENDDEAGGNSSSEEKSGLGGPS 136
           +  LGS   G S P+   D +AGG   + + S  GG S
Sbjct: 298 LSALGSYFRGQSLPSTYPDSDAGGKRGTGKDSDAGGSS 335


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,938,938
Number of Sequences: 28952
Number of extensions: 283006
Number of successful extensions: 887
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)