Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00829
(715 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless prot... 26 0.26
U09586-2|AAC47271.1| 712|Tribolium castaneum protease, reverse ... 25 0.61
AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholo... 23 2.5
DQ659254-1|ABG47452.1| 431|Tribolium castaneum imaginal disc gr... 21 7.5
EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic acetyl... 21 9.9
DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein. 21 9.9
>AF225975-2|AAF74116.1| 302|Tribolium castaneum Tc-tailless
protein.
Length = 302
Score = 26.2 bits (55), Expect = 0.26
Identities = 18/55 (32%), Positives = 26/55 (47%)
Frame = -1
Query: 418 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSSSNLLP*MDFPPVPLWLVKSP 254
VL + M +EP P++ PGP F +N LP PP+PL + +P
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPAGFLCNNYLPLPQVPPLPLPPIFAP 191
>U09586-2|AAC47271.1| 712|Tribolium castaneum protease, reverse
transcriptase andRNase H protein.
Length = 712
Score = 25.0 bits (52), Expect = 0.61
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +1
Query: 286 ESPSTAISLKTR---ISPLSTLDLASSPWLMPV 375
ESP A L R I +ST+DL SS W +P+
Sbjct: 373 ESPPAADELLRRFHEIRYMSTIDLRSSYWQIPL 405
>AF219117-1|AAF71999.1| 406|Tribolium castaneum tailless ortholog
protein.
Length = 406
Score = 23.0 bits (47), Expect = 2.5
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = -1
Query: 418 VLTVVMKNWEPLVSAPALAMERTPGPVCLRVKFSSSNLLP*MDFPPVPL 272
VL + M +EP P++ PGP F +N P PP+PL
Sbjct: 143 VLNLTMPKYEP---NPSII---DPGPALPPTGFLCNNYPPLPQVPPLPL 185
>DQ659254-1|ABG47452.1| 431|Tribolium castaneum imaginal disc
growth factor 4 protein.
Length = 431
Score = 21.4 bits (43), Expect = 7.5
Identities = 7/12 (58%), Positives = 10/12 (83%)
Frame = +1
Query: 157 TCENFRALCTGD 192
T ++FR LCTG+
Sbjct: 408 TLDDFRGLCTGN 419
>EF127810-1|ABL67947.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
5 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 368 CRC*Y*WFPVLHHHCQDLLAGW 433
C+ WFP HC W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149
>EF127809-1|ABL67946.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
4 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 368 CRC*Y*WFPVLHHHCQDLLAGW 433
C+ WFP HC W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149
>EF127808-1|ABL67945.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
3 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 368 CRC*Y*WFPVLHHHCQDLLAGW 433
C+ WFP HC W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149
>EF127807-1|ABL67944.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
2 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 368 CRC*Y*WFPVLHHHCQDLLAGW 433
C+ WFP HC W
Sbjct: 128 CKIDITWFPFDDQHCDMKFGSW 149
>EF127806-1|ABL67943.1| 311|Tribolium castaneum nicotinic
acetylcholine receptor subunitalpha 6 transcript variant
1 protein.
Length = 311
Score = 21.0 bits (42), Expect = 9.9
Identities = 7/22 (31%), Positives = 8/22 (36%)
Frame = +2
Query: 368 CRC*Y*WFPVLHHHCQDLLAGW 433
C+ WFP HC W
Sbjct: 128 CKMDITWFPFDDQHCDMKFGSW 149
>DQ138189-1|ABA03053.1| 162|Tribolium castaneum bursicon protein.
Length = 162
Score = 21.0 bits (42), Expect = 9.9
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 431 WQTCCLWECC*RHGSCQAD*DLWQPVGKTSKRIVIK 538
WQ CC G +A L+ P K +R IK
Sbjct: 81 WQMERSCMCCQESGEREASVSLFCPKAKPGERKFIK 116
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,910
Number of Sequences: 336
Number of extensions: 4038
Number of successful extensions: 11
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18947110
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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