Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00829
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0) 161 7e-40
SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.) 149 2e-36
SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.) 129 3e-30
SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19) 98 7e-21
SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.) 87 2e-17
SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24) 86 2e-17
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 82 4e-16
SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23) 82 5e-16
SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05) 77 1e-14
SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11) 49 4e-06
SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 4e-05
SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 7e-04
SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06) 36 0.033
SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2) 33 0.30
SB_24760| Best HMM Match : PT (HMM E-Value=0.17) 31 0.70
SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.70
SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035) 31 1.2
SB_3760| Best HMM Match : SVA (HMM E-Value=0.19) 30 1.6
SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42) 30 2.1
SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3) 28 6.5
SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5) 28 6.5
SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56) 28 8.6
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23) 28 8.6
>SB_48466| Best HMM Match : Pro_isomerase (HMM E-Value=0)
Length = 298
Score = 161 bits (390), Expect = 7e-40
Identities = 72/103 (69%), Positives = 83/103 (80%)
Frame = +3
Query: 207 QGLHFPSCHPQFHAARGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 386
+G F PQF GDFT HNGTGGKSIYG KFEDENF LKHTG GVLSMAN+G +TN
Sbjct: 182 KGSSFHRIIPQFMCQGGDFTKHNGTGGKSIYGAKFEDENFVLKHTGAGVLSMANSGPNTN 241
Query: 387 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGR 515
GSQFF+TT KT WLDG+HVVFGNV+EG +VV+++E GSQSG+
Sbjct: 242 GSQFFLTTEKTDWLDGKHVVFGNVIEGFDVVRKMEAVGSQSGK 284
Score = 99.1 bits (236), Expect = 3e-21
Identities = 42/62 (67%), Positives = 49/62 (79%)
Frame = +1
Query: 73 PRVFFDVTVDDAPXGKIVIELRSDVTPKTCENFRALCTGDXGFGYKGSIFHRVIPNFMLQ 252
PRVFFD+T+ + G+IV+ELRSDV P T ENFR LCT + GFGYKGS FHR+IP FM Q
Sbjct: 137 PRVFFDITIGERSAGRIVMELRSDVVPMTAENFRCLCTHEKGFGYKGSSFHRIIPQFMCQ 196
Query: 253 GG 258
GG
Sbjct: 197 GG 198
>SB_31360| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 235
Score = 149 bits (362), Expect = 2e-36
Identities = 69/103 (66%), Positives = 79/103 (76%)
Frame = +3
Query: 207 QGLHFPSCHPQFHAARGDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTN 386
+G F P F GDFT +GTGGKSIYG KF DENF LKHTGPG+LSMANAG TN
Sbjct: 48 KGSSFHRVIPGFMCQGGDFTRGDGTGGKSIYGAKFADENFNLKHTGPGILSMANAGPGTN 107
Query: 387 GSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGR 515
GSQFF+ T KTSWLDG+HVVFG+V +GM+VVK+IE GS SG+
Sbjct: 108 GSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKIEKVGSDSGK 150
Score = 99.1 bits (236), Expect = 3e-21
Identities = 42/59 (71%), Positives = 48/59 (81%)
Frame = +1
Query: 82 FFDVTVDDAPXGKIVIELRSDVTPKTCENFRALCTGDXGFGYKGSIFHRVIPNFMLQGG 258
+FD+ + AP G+IV+ELR DV PKT ENFRALCTG+ GFGYKGS FHRVIP FM QGG
Sbjct: 6 YFDIEIGGAPAGRIVMELRDDVVPKTAENFRALCTGEKGFGYKGSSFHRVIPGFMCQGG 64
>SB_24678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 130 bits (314), Expect = 1e-30
Identities = 61/92 (66%), Positives = 71/92 (77%), Gaps = 1/92 (1%)
Frame = +3
Query: 255 GDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDG 434
GDFTN +GTGG SIYG F+DENF LKH GPG L MANAG +TNGSQF+ITT+KTSWLDG
Sbjct: 87 GDFTNKDGTGGYSIYGKYFDDENFNLKHYGPGWLCMANAGKNTNGSQFYITTIKTSWLDG 146
Query: 435 RHVVFGNVVEGMEVVKQIE-TFGSQSGRPLRE 527
H FG V+EGM+VV++IE T +PL E
Sbjct: 147 SHTCFGKVLEGMDVVRRIENTRVDTHDKPLDE 178
Score = 74.1 bits (174), Expect = 1e-13
Identities = 32/61 (52%), Positives = 42/61 (68%)
Frame = +1
Query: 76 RVFFDVTVDDAPXGKIVIELRSDVTPKTCENFRALCTGDXGFGYKGSIFHRVIPNFMLQG 255
+V+ DV++ P G++++ L D PKT NF AL + GFGYK SIFHRVI NFM+QG
Sbjct: 27 KVWMDVSIGGQPAGRVILGLFGDTAPKTVANFVALADKEQGFGYKDSIFHRVIKNFMIQG 86
Query: 256 G 258
G
Sbjct: 87 G 87
>SB_24677| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 129 bits (311), Expect = 3e-30
Identities = 59/74 (79%), Positives = 63/74 (85%)
Frame = +3
Query: 255 GDFTNHNGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDG 434
GDFT +GTGGKSIYG KF DENF L+H G G LSMANAG DTNGSQFFITTVKT WLDG
Sbjct: 106 GDFTKGDGTGGKSIYGQKFADENFKLQHYGAGWLSMANAGKDTNGSQFFITTVKTPWLDG 165
Query: 435 RHVVFGNVVEGMEV 476
RHVVFG V++GMEV
Sbjct: 166 RHVVFGKVLKGMEV 179
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/79 (39%), Positives = 41/79 (51%), Gaps = 18/79 (22%)
Frame = +1
Query: 76 RVFFDVTVDDAPXGKI------VIELRSDVTPKTCE-----NFRAL-----CT--GDXGF 201
+VFFD+T+ G+I +I+ + + E NFR CT GF
Sbjct: 28 KVFFDITIGGEKAGRIEIGLFVIIKTYYLLATRLVESLIGTNFRYFDTYYCCTIESQKGF 87
Query: 202 GYKGSIFHRVIPNFMLQGG 258
GYK SIFHRVI +FM+QGG
Sbjct: 88 GYKNSIFHRVIQDFMIQGG 106
>SB_51693| Best HMM Match : Pro_isomerase (HMM E-Value=3.5e-19)
Length = 99
Score = 97.9 bits (233), Expect = 7e-21
Identities = 45/73 (61%), Positives = 57/73 (78%), Gaps = 1/73 (1%)
Frame = +3
Query: 273 NGTGGKSIYGNKFEDE-NFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVF 449
+GTGG+SI+G +FEDE + L+H P +SMANAG +TNGSQFFIT V T WLD +H VF
Sbjct: 2 DGTGGESIWGGEFEDEFHRNLRHDRPYTVSMANAGPNTNGSQFFITVVPTPWLDNKHTVF 61
Query: 450 GNVVEGMEVVKQI 488
G VV+GM+V +QI
Sbjct: 62 GRVVKGMDVAQQI 74
>SB_24676| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 86.6 bits (205), Expect = 2e-17
Identities = 37/55 (67%), Positives = 46/55 (83%)
Frame = +3
Query: 360 MANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIETFGSQSGRPLR 524
MANAG DTNGSQFFITTVKTSWLDG+HVVFG V+EGM+VV+++E + P++
Sbjct: 1 MANAGKDTNGSQFFITTVKTSWLDGKHVVFGKVLEGMDVVRKLENVNVKGSTPVK 55
>SB_25950| Best HMM Match : Pro_isomerase (HMM E-Value=2.5e-24)
Length = 145
Score = 86.2 bits (204), Expect = 2e-17
Identities = 38/81 (46%), Positives = 54/81 (66%)
Frame = +3
Query: 276 GTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGN 455
G GG+S+YG FEDE+F++ H GV+ MAN G TNGSQF+IT W+D ++V FG
Sbjct: 46 GIGGESVYGPLFEDEDFSVAHNRRGVVGMANKGRHTNGSQFYITLQPAPWMDTKYVAFGQ 105
Query: 456 VVEGMEVVKQIETFGSQSGRP 518
V+EG+ V+ +E + + RP
Sbjct: 106 VIEGLNVLDVLEGQETFNERP 126
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 82.2 bits (194), Expect = 4e-16
Identities = 36/53 (67%), Positives = 46/53 (86%)
Frame = +3
Query: 333 KHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQIE 491
+H PG+LSMAN+G +TNGSQFFITTV T LDGRHVVFG V++GM+VV+++E
Sbjct: 188 EHDKPGLLSMANSGPNTNGSQFFITTVPTPHLDGRHVVFGKVLKGMDVVRELE 240
>SB_32917| Best HMM Match : Pro_isomerase (HMM E-Value=5.1e-23)
Length = 378
Score = 81.8 bits (193), Expect = 5e-16
Identities = 44/83 (53%), Positives = 55/83 (66%), Gaps = 1/83 (1%)
Frame = +3
Query: 273 NGTGGKSIYGNKFEDENFTLKHTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 452
NGTGG+SIYG F DE F KH P +LSMAN G +TNGSQFFI HVVFG
Sbjct: 25 NGTGGESIYGGTFGDECFEFKHERPMLLSMANRGPNTNGSQFFII----------HVVFG 74
Query: 453 NVVEGMEVVKQIETF-GSQSGRP 518
+V++G E+V+QIE+ ++ RP
Sbjct: 75 HVIQGEELVRQIESLPTNEKNRP 97
>SB_3070| Best HMM Match : Pro_isomerase (HMM E-Value=2.3e-05)
Length = 49
Score = 77.4 bits (182), Expect = 1e-14
Identities = 33/46 (71%), Positives = 41/46 (89%)
Frame = +3
Query: 351 VLSMANAGADTNGSQFFITTVKTSWLDGRHVVFGNVVEGMEVVKQI 488
+LSMANAG TNGSQFF+ T KTSWLDG+HVVFG+V +GM+VVK++
Sbjct: 2 ILSMANAGPGTNGSQFFLCTAKTSWLDGKHVVFGSVKDGMDVVKKM 47
>SB_21081| Best HMM Match : Pro_isomerase (HMM E-Value=0.11)
Length = 48
Score = 48.8 bits (111), Expect = 4e-06
Identities = 24/46 (52%), Positives = 29/46 (63%), Gaps = 8/46 (17%)
Frame = +1
Query: 115 GKIVIELRSDVTPKTCENFRALCTGDXGFG--------YKGSIFHR 228
G+++ EL +D PKT ENFRALCTG+ G G YKG FHR
Sbjct: 2 GRVLFELFADKVPKTAENFRALCTGEKGIGPSTGKPLHYKGCPFHR 47
>SB_23239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 251
Score = 45.6 bits (103), Expect = 4e-05
Identities = 25/48 (52%), Positives = 31/48 (64%)
Frame = +1
Query: 115 GKIVIELRSDVTPKTCENFRALCTGDXGFGYKGSIFHRVIPNFMLQGG 258
G+I IEL +D P + NF A D G+ Y G+ FHRVIP FM+QGG
Sbjct: 33 GEIEIELDADKAPISTANFLAYV--DSGY-YAGTQFHRVIPGFMVQGG 77
Score = 33.9 bits (74), Expect = 0.13
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Frame = +3
Query: 336 HTGPGVLSMANAGA-DTNGSQFFITTVKTSWLDGR-----HVVFGNVVEGMEVVKQI 488
H G L+MA D+ SQFFI ++LD + VFG VV+GM+VV +I
Sbjct: 101 HNVRGTLAMARTQVRDSATSQFFINHKDNAFLDHGSRDFGYAVFGKVVKGMDVVDKI 157
>SB_39222| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1651
Score = 41.5 bits (93), Expect = 7e-04
Identities = 19/39 (48%), Positives = 25/39 (64%)
Frame = +3
Query: 336 HTGPGVLSMANAGADTNGSQFFITTVKTSWLDGRHVVFG 452
H G +SMAN G ++NGSQFFI K LD ++ +FG
Sbjct: 301 HNARGTVSMANNGPNSNGSQFFICYGKQPHLDMKYTMFG 339
>SB_42464| Best HMM Match : Pro_isomerase (HMM E-Value=3.9e-06)
Length = 454
Score = 35.9 bits (79), Expect = 0.033
Identities = 19/40 (47%), Positives = 23/40 (57%)
Frame = +1
Query: 115 GKIVIELRSDVTPKTCENFRALCTGDXGFGYKGSIFHRVI 234
G I IEL TPK C NF LC G+ Y +IFHR++
Sbjct: 13 GDIDIELWGKETPKACRNFIQLCL--EGY-YDNTIFHRIV 49
>SB_6440| Best HMM Match : DUF638 (HMM E-Value=6.2)
Length = 175
Score = 32.7 bits (71), Expect = 0.30
Identities = 14/28 (50%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Frame = +3
Query: 438 HVVFGNVVEGMEVVKQIETF-GSQSGRP 518
HVVFG+V++G E+V+QIE+ ++ RP
Sbjct: 3 HVVFGHVIQGEELVRQIESLPTNEKNRP 30
>SB_24760| Best HMM Match : PT (HMM E-Value=0.17)
Length = 422
Score = 31.5 bits (68), Expect = 0.70
Identities = 18/46 (39%), Positives = 20/46 (43%)
Frame = -1
Query: 478 TTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 341
TT PST P T PS+ E +T WEP P PGP
Sbjct: 34 TTGEPSTWEPMTGA-PSTWEPMTGAPSTWEPWTDGPGPYPTDGPGP 78
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -1
Query: 451 PKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 341
P TT PS+ E +T WEP+ AP+ T GP
Sbjct: 32 PFTTGEPSTWEPMTGAPSTWEPMTGAPSTWEPWTDGP 68
>SB_6387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 197
Score = 31.5 bits (68), Expect = 0.70
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -1
Query: 481 LTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 341
L+ + + FP TT P + + T + EPL+ P +R P P
Sbjct: 13 LSATQLTAAFPTTTTTPVTTQTTTTDVSRTEPLIELPTAQEKRKPCP 59
>SB_19689| Best HMM Match : VWA (HMM E-Value=0.0035)
Length = 885
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/28 (53%), Positives = 18/28 (64%)
Frame = +1
Query: 106 APXGKIVIELRSDVTPKTCENFRALCTG 189
AP I+I L S V+PKT E+ R LC G
Sbjct: 569 APKIDIIIALDSGVSPKTFEDERQLCAG 596
>SB_3760| Best HMM Match : SVA (HMM E-Value=0.19)
Length = 259
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 5/43 (11%)
Frame = -1
Query: 454 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 341
FP+ + LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPSLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_32934| Best HMM Match : K_tetra (HMM E-Value=7.79963e-42)
Length = 1207
Score = 29.9 bits (64), Expect = 2.1
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 147 DVTSQL-NNNFSXWGIVNSDVEEYSW*RHFAGISNVSNLQNHHNDNA 10
DV S L S WGI + D+E+ W + I+ L++ H D+A
Sbjct: 90 DVCSTLFQEELSYWGINDRDMEQCCWAHYKRQINTEETLKSFHLDSA 136
>SB_19447| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1110
Score = 29.5 bits (63), Expect = 2.8
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
Frame = -1
Query: 454 FPKTTCLPSSQE-----VLTVVMKNWEPLVSAPALAMERTPGP 341
FP+ LP S E +LT++++N P ++APA + P P
Sbjct: 81 FPQPPLLPPSSESFDITLLTILLRNICPTLTAPATGWDALPAP 123
>SB_51093| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 253
Score = 29.1 bits (62), Expect = 3.7
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = -1
Query: 499 PKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGPVCLRVKF 320
P+ TTS PST+ P+T ++ T N AP+ + RT + LR
Sbjct: 87 PRTGSTTTTSAPSTSTPRTGSTTTTSAPSTSTTSN--STTRAPSTSTPRTGSTITLRTST 144
Query: 319 SS 314
+S
Sbjct: 145 TS 146
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 28.3 bits (60), Expect = 6.5
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = -3
Query: 185 VHRARKFSHVLGV--TSLLSSITIFPXGASSTVTSKNTRGRDILPV 54
+ + KF+H+ G+ TS T+F +T T TR RD++ +
Sbjct: 168 IQQLHKFTHIHGMLSTSSRGRYTLFRGQYDTTATQIYTRSRDVIDI 213
>SB_18819| Best HMM Match : DUF822 (HMM E-Value=0.3)
Length = 866
Score = 28.3 bits (60), Expect = 6.5
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +1
Query: 232 IPNFMLQGGTSPTITALGESPSTAISLKTRISPLSTLD--LASSPWLMP 372
I N QG ++++GESP ++S + L+T+D AS+ L P
Sbjct: 320 IKNLQAQGNLGEMVSSVGESPKGSVSDLMNATGLATIDDKTASNTSLAP 368
>SB_15696| Best HMM Match : DUF282 (HMM E-Value=2.5)
Length = 128
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/20 (65%), Positives = 14/20 (70%)
Frame = +2
Query: 176 PCALATXASVTRAPFSIVSS 235
PCALAT SV+ P S VSS
Sbjct: 48 PCALATAPSVSEVPASTVSS 67
>SB_13311| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6406
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 532 NDSLRGLPDWLPKVSICLTTSMPSTTFPKT 443
+D+L L +WLPKV ++ P + P+T
Sbjct: 2681 HDALSALEEWLPKVQEAVSNQQPISGDPET 2710
>SB_16757| Best HMM Match : S-antigen (HMM E-Value=0.56)
Length = 1566
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/45 (35%), Positives = 20/45 (44%)
Frame = +2
Query: 110 HXEKLLLS*EVTSLPRRVKTSVPCALATXASVTRAPFSIVSSPIS 244
H L VT LP VK + + ASVT P S+ P+S
Sbjct: 1214 HASVTQLPASVTQLPVSVKHLLTSVMHLHASVTHLPASVTQLPVS 1258
>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
Length = 2123
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = -1
Query: 511 PDWLPKVSICLTTSMPSTTFPKTTCLPSSQEVLTVVMKNWEPLVSAPALAMERTPGP 341
P P + TT+ P TT P+TT P + T + P + P +T P
Sbjct: 1767 PPHSPPTTTTTTTTTPETTAPRTT-TPETTTPETTTPRTTTPETTKPRTTTPKTTTP 1822
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,324,693
Number of Sequences: 59808
Number of extensions: 516813
Number of successful extensions: 1494
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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