Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00828
         (718 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    29   0.88 
SPAC328.07c |||heavy metal ion homeostasis protein |Schizosaccha...    27   3.5  
SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-phosphat...    26   4.7  
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein...    26   6.2  
SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown 7|Schizos...    26   6.2  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    25   8.2  

>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -1

Query: 409 PEANWGSWFCVQICCVLMC 353
           P A WG WF V I   L+C
Sbjct: 608 PAAGWGEWFAVSIPVSLLC 626


>SPAC328.07c |||heavy metal ion homeostasis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 277

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 390 VGSVYRYVAS*CATTSEPMPGFLKIYMLCTT 298
           VG+ + +V S C     P  GFL  Y+L TT
Sbjct: 157 VGTGFSFVWSACVAILFPFVGFLVTYVLSTT 187


>SPBP18G5.02 |||CDP-diacylglycerol-glycerol-3-phosphate3-
           phosphatidyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 317 IFKNPGIGSEVVAHQDATYLYTEPTP 394
           + K+ GIG  +VA Q A   Y  P P
Sbjct: 351 LLKSEGIGEVIVASQQANGFYRSPGP 376


>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 715

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 17/44 (38%), Positives = 24/44 (54%)
 Frame = -1

Query: 337 NARVLKNIHALHHSRLNKAKLFANALHASLYV*HLKIGCRRCSA 206
           ++ +LK  HA HH+   K+ +F NA   S  V    IG  RCS+
Sbjct: 128 SSNMLKT-HA-HHTNSTKSTIFRNANLQSYGVDDSDIGSLRCSS 169


>SPBC359.01 ||SPBPB10D8.08|amino acid permease, unknown
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 581

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -1

Query: 421 FKSYPEANWGSWFCVQICCVLMCNHFGTNA 332
           FK + E N  +W  + +  V++ N FG  A
Sbjct: 181 FKFWTEINSAAWISIFLAVVIVINLFGVRA 210


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -3

Query: 77  FLCCRERCSLLYVWQV 30
           FLCC     LLY+W +
Sbjct: 551 FLCCIVSTGLLYIWNI 566


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,137,099
Number of Sequences: 5004
Number of extensions: 66182
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)