Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00828
(718 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0861 - 28348669-28348711,28349471-28349557,28349640-283497... 56 2e-08
05_05_0192 - 23128460-23128502,23129130-23129216,23129299-231294... 56 4e-08
01_06_1501 + 37804029-37804600,37804626-37805388 31 0.91
12_01_0059 + 494876-494924,496060-496211,496344-496531,496971-49... 30 1.6
04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,134... 28 6.4
03_02_0774 + 11074508-11074880,11076270-11076370,11076453-110765... 28 6.4
04_03_0782 + 19600510-19600771,19601192-19601293,19601439-196015... 28 8.5
03_02_0287 + 7104144-7106069 28 8.5
02_01_0767 - 5709733-5709789,5709845-5709871,5710374-5710449,571... 28 8.5
>03_05_0861 -
28348669-28348711,28349471-28349557,28349640-28349784,
28350832-28350900,28351147-28351207,28351375-28351493,
28351659-28351713
Length = 192
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/62 (35%), Positives = 37/62 (59%)
Frame = +1
Query: 532 YDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHAYTFHVVETYNNLYST 711
+D P+ Y F P+ V G +++HG+++H+S N S SRHA + HV++T +S
Sbjct: 117 FDHPSPTYDLKEFVPLEVKSGDLVVIHGDLIHQSFENLSPVSRHALSLHVIDTEGCEWSK 176
Query: 712 EN 717
+N
Sbjct: 177 QN 178
Score = 46.8 bits (106), Expect = 2e-05
Identities = 22/49 (44%), Positives = 30/49 (61%)
Frame = +3
Query: 60 FSTTEKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTVEPEISLNKVGH 206
FST + +K+ +F +S + I FFEE A DG L E+S+NKVGH
Sbjct: 53 FSTKDHRQVKNDFFFKSAENISFFFEEKAFGDDGCLKQAKELSINKVGH 101
>05_05_0192 -
23128460-23128502,23129130-23129216,23129299-23129443,
23130812-23130872,23131046-23131164,23131320-23131374
Length = 169
Score = 55.6 bits (128), Expect = 4e-08
Identities = 23/62 (37%), Positives = 37/62 (59%)
Frame = +1
Query: 532 YDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHAYTFHVVETYNNLYST 711
+D P+ Y F P+ V G +++HG++VH+S N S SRHA + HV++T +S
Sbjct: 94 FDHPSPTYDLKEFVPLEVKSGDLVVIHGDLVHQSFENLSLVSRHALSLHVIDTEGCEWSK 153
Query: 712 EN 717
+N
Sbjct: 154 QN 155
Score = 28.3 bits (60), Expect = 6.4
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +3
Query: 60 FSTTEKTHLKDKYFLESNDKIRCFFEEG 143
FST + +K+ +F +S + I FFE+G
Sbjct: 53 FSTKDHRQVKNDFFFKSAENISFFFEDG 80
>01_06_1501 + 37804029-37804600,37804626-37805388
Length = 444
Score = 31.1 bits (67), Expect = 0.91
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = -3
Query: 524 ASSLSYLGCGSNVCALLTCESLETATDSRFELWLLQELSRSQL 396
A SLS LG G+ V +L ++TAT S E W +L+R+ L
Sbjct: 370 AMSLSVLGVGNYVSGVLV-SVIDTATRSGGESWFSDDLNRAHL 411
>12_01_0059 +
494876-494924,496060-496211,496344-496531,496971-497027,
497123-497282,497389-497457,497712-497837,497972-498091
Length = 306
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/50 (34%), Positives = 24/50 (48%)
Frame = -1
Query: 361 LMCNHFGTNARVLKNIHALHHSRLNKAKLFANALHASLYV*HLKIGCRRC 212
+ CN+ ++LKN HA H +K FA L YV + IG + C
Sbjct: 194 IYCNNLFIQEQMLKNGHAWHFKTYDKRPEFARRLFRQKYV--MYIGMKVC 241
>04_01_0126 - 1340540-1341376,1341437-1341900,1342105-1342156,
1342225-1342799,1343596-1343703,1345823-1346155,
1346783-1349306
Length = 1630
Score = 28.3 bits (60), Expect = 6.4
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = -2
Query: 393 GVGSVYRYVAS*CATTSEPMPGFLKIYMLCTTAGSIK--PSSLQMLFTLHY 247
GVG+ +YV S + +P L+ Y++ GS+ ++ MLFT Y
Sbjct: 1281 GVGNEVKYVISKVWVQCKGLPSELREYLIICAVGSLLGITKAVDMLFTRRY 1331
>03_02_0774 + 11074508-11074880,11076270-11076370,11076453-11076509,
11076596-11076690,11077480-11077579,11078272-11078330,
11078874-11079001,11079362-11079440,11079708-11079795,
11080490-11080590,11080822-11080900,11081740-11081850,
11082655-11082750,11082885-11083007,11085750-11085947,
11086071-11086172,11086570-11086634,11086888-11087008,
11088540-11088697,11088823-11088973,11089414-11089521,
11089939-11090031,11090285-11090321,11090659-11090906,
11091396-11091542,11091929-11092099,11092166-11092175,
11093360-11093505
Length = 1114
Score = 28.3 bits (60), Expect = 6.4
Identities = 12/39 (30%), Positives = 18/39 (46%)
Frame = -1
Query: 709 SSTNCCMSPPRGKCRRGDSYQICCGSSYVQRCRVIVYTF 593
SS + GKC++G S +C S+ C+ Y F
Sbjct: 1051 SSAQLIAAGKNGKCQKGPSAAMCLNSTMAAICKASEYCF 1089
>04_03_0782 +
19600510-19600771,19601192-19601293,19601439-19601534,
19601625-19601717,19601814-19601893,19602000-19602281,
19602624-19602751,19603134-19603503
Length = 470
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 120 IRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLHPIFRCYTYS 251
+ F E G GN+ V E S NK + L+L P ++YS
Sbjct: 96 VGAFSENGPFRPSGNVLVRNEYSWNKEANMLYLESPAGVGFSYS 139
>03_02_0287 + 7104144-7106069
Length = 641
Score = 27.9 bits (59), Expect = 8.5
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -1
Query: 562 IVDKPLQVYHRLKPRHCLIWVAD 494
+VDK L+++H +K ++C+ AD
Sbjct: 385 LVDKGLEIFHSIKEQYCIEHTAD 407
>02_01_0767 -
5709733-5709789,5709845-5709871,5710374-5710449,
5710542-5710661,5711321-5711421,5711618-5711743,
5713504-5713596,5713694-5713816,5713889-5714032,
5714539-5714672,5714893-5715002,5715315-5715430,
5716438-5716572,5716650-5716820,5717545-5717709,
5718165-5718242,5718313-5718445,5718551-5718741,
5718842-5718914,5719001-5719056,5719142-5719300,
5719383-5719496,5719562-5719654,5720544-5720726,
5720801-5720878,5720966-5721052,5721135-5721216,
5721288-5721400,5721486-5721636,5721759-5721877,
5721966-5722163,5722377-5722442,5723837-5723957,
5724224-5724343,5724412-5724542,5725210-5725341,
5725418-5725519,5726231-5726437,5726510-5726626,
5727468-5727623,5727721-5727810,5728624-5728848,
5728969-5729091,5729202-5729284,5729459-5729618,
5730264-5730374,5730652-5730751,5731375-5731454,
5731752-5731847,5731961-5732110
Length = 1991
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +3
Query: 57 TFSTTEKTHLKDKYFLESNDK-IRCFFEEGAIDADGNLTVEPEISLNKVGHALHLL 221
TF + + +K L S+D R F E + +D NLT+E + + ++ A+HL+
Sbjct: 272 TFVSDALSTSHEKPSLSSSDSSFRRDFHELVMRSDNNLTIEGFVGVVRLAWAVHLM 327
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,566,127
Number of Sequences: 37544
Number of extensions: 439844
Number of successful extensions: 1061
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1032
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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