Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00828
         (718 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)               62   4e-10
SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)                      36   0.033
SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)           30   2.2  
SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_52148| Best HMM Match : EGF (HMM E-Value=0)                         29   3.8  
SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  

>SB_3948| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1112

 Score = 62.1 bits (144), Expect = 4e-10
 Identities = 26/49 (53%), Positives = 34/49 (69%)
 Frame = +1

Query: 541 PAAVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHAYTFHVVE 687
           P   Y  S   P+  +KG  +++HG+V+H+S  NKS KSRHAYTFHVVE
Sbjct: 109 PDEEYDDSKSVPLCTNKGALVIIHGSVLHRSFPNKSSKSRHAYTFHVVE 157


>SB_51929| Best HMM Match : ARID (HMM E-Value=1.2)
          Length = 391

 Score = 35.9 bits (79), Expect = 0.033
 Identities = 16/24 (66%), Positives = 16/24 (66%)
 Frame = +3

Query: 90  DKYFLESNDKIRCFFEEGAIDADG 161
           D YFL S DKIR F EEGA D  G
Sbjct: 365 DDYFLTSGDKIRPFMEEGAFDKQG 388


>SB_44231| Best HMM Match : Ion_trans_2 (HMM E-Value=6.5e-09)
          Length = 441

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +1

Query: 580 PVSKGTCILLHGNVVHKSSHNKSDKS 657
           PV+  T  ++H   VHK SHN S KS
Sbjct: 318 PVTSSTNRVVHNQPVHKLSHNSSTKS 343


>SB_54131| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3160

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 273  KSLALLSRLWCKACIFLRTLALVPKWLHIKTQHICTQNQLPQLASG*LLKKPQFKTAVC 449
            K++ LL +      +  R   LV KW  +   HI T   +    +G  +  PQ   A+C
Sbjct: 2047 KTINLLRKKTNNESLAKRAKKLVKKWQSLVINHIQTTRSVDSPLNGSRISSPQINGAIC 2105


>SB_52148| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1055

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 682  PRGKC--RRGDSYQICCGSSYVQRCRVIVYTFLSKP 581
            P G C  RRGD + +C       RC+V++   LS P
Sbjct: 930  PHGICMTRRGDPFCVCTEGYTGLRCKVVINHCLSNP 965


>SB_46125| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1564

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -3

Query: 500 CGSNVCALLTCE----SLETATDSRFELWLLQELSRSQLGELVLCTDMLRLD 357
           C S  CALLTCE    +LETA   R  +       + +L  +V+   +LR D
Sbjct: 629 CFSQYCALLTCENHVVALETAKSLRSFVNFGSSSLKEELFRVVILPSILRCD 680


>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -1

Query: 421 FKSYPEANWGSWFCVQICCVLMCNHF 344
           ++ YP+ + G  FC+Q+C +L C  +
Sbjct: 338 YRGYPQPSVG--FCIQMCTILNCTKY 361


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,188,213
Number of Sequences: 59808
Number of extensions: 529087
Number of successful extensions: 1308
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)