Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00828
         (718 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-1163|AAF54534.2|  287|Drosophila melanogaster CG14688-P...   111   9e-25
AY051968-1|AAK93392.1| 1057|Drosophila melanogaster LD43457p pro...    29   4.8  
AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein ...    29   4.8  
AE013599-80|AAF57329.3| 1057|Drosophila melanogaster CG30440-PA ...    29   4.8  
AY051544-1|AAK92968.1|  449|Drosophila melanogaster GH19222p pro...    29   6.3  
AE014297-635|AAF54140.1|  449|Drosophila melanogaster CG2616-PA ...    29   6.3  
AE013599-661|AAF59082.2| 1226|Drosophila melanogaster CG30361-PB...    29   6.3  

>AE014297-1163|AAF54534.2|  287|Drosophila melanogaster CG14688-PA
           protein.
          Length = 287

 Score =  111 bits (267), Expect = 9e-25
 Identities = 49/73 (67%), Positives = 60/73 (82%), Gaps = 1/73 (1%)
 Frame = +1

Query: 502 PR*DSDEALIYDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHAYTFHV 681
           P  D+ E ++YD+ A +YPQSSFTP+ VSKGTCIL+HGNVVHKS  N+S KSRHAYTFHV
Sbjct: 197 PDKDASELMVYDRAAPIYPQSSFTPMQVSKGTCILIHGNVVHKSEPNRSQKSRHAYTFHV 256

Query: 682 VETYNNL-YSTEN 717
           +ET NN+ YS +N
Sbjct: 257 IETENNVKYSEDN 269



 Score =  102 bits (245), Expect = 4e-22
 Identities = 44/90 (48%), Positives = 59/90 (65%)
 Frame = +2

Query: 257 VKSICKELGFIEPAVVQSMYIFKNPGIGSEVVAHQDATYLYTEPTPPVGFWIALEEATVQ 436
           V+ IC +L + +PAV QSMYI+KNPG+G EV  HQD+ +L+T+P   VGFW+ALE+ T+Q
Sbjct: 115 VREICWQLNYNKPAVCQSMYIYKNPGVGGEVTPHQDSWFLHTDPNSAVGFWLALEDCTLQ 174

Query: 437 NGCLWLXXXXXXXXXXXXLIRNPDKTVTRL 526
           NGCL               +RNPDK  + L
Sbjct: 175 NGCLQFIKGSHKSGVHRRYLRNPDKDASEL 204



 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 37/69 (53%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
 Frame = +3

Query: 51  RATFSTT--EKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHLLH 224
           R  FST   E    K+ YF+ES DK+R FFE+GA+  +G L V+P I+LNKVGHALH+ H
Sbjct: 44  RKIFSTIKQEDAQGKELYFMESGDKVRYFFEKGAVGDEGQLLVDPMIALNKVGHALHVEH 103

Query: 225 PIFRCYTYS 251
           P F   T+S
Sbjct: 104 PAFNAITFS 112


>AY051968-1|AAK93392.1| 1057|Drosophila melanogaster LD43457p
           protein.
          Length = 1057

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 547 AVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHAYTFHVVE 687
           A +PQ+ +T I     TC +  G   +K+  NK   S+ +  FH V+
Sbjct: 270 AEHPQTKYTDIKYDYKTCSISQGLHQNKAFLNKVPPSKQSKPFHSVD 316


>AJ635224-1|CAG25619.1|  951|Drosophila melanogaster gag protein
           protein.
          Length = 951

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 12/26 (46%), Positives = 13/26 (50%)
 Frame = -1

Query: 715 FRSSTNCCMSPPRGKCRRGDSYQICC 638
           FR + N CM PPR     GD    CC
Sbjct: 662 FRHAKNSCMKPPRCMKCAGDHLSSCC 687


>AE013599-80|AAF57329.3| 1057|Drosophila melanogaster CG30440-PA
           protein.
          Length = 1057

 Score = 29.5 bits (63), Expect = 4.8
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 547 AVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHAYTFHVVE 687
           A +PQ+ +T I     TC +  G   +K+  NK   S+ +  FH V+
Sbjct: 270 AEHPQTKYTDIKYDYKTCSISQGLHQNKAFLNKVPPSKQSKPFHSVD 316


>AY051544-1|AAK92968.1|  449|Drosophila melanogaster GH19222p
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 449 TDSRFELWLLQELSRSQLGELVLCTDMLRLDVQPLRNQCQGS*KYTCF 306
           +D RF++  LQ++  +  G ++    M  LDV   R Q Q S  + CF
Sbjct: 82  SDPRFQIRPLQQVISACTGAMITACFMTPLDVIKTRMQSQQSPAHKCF 129


>AE014297-635|AAF54140.1|  449|Drosophila melanogaster CG2616-PA
           protein.
          Length = 449

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = -3

Query: 449 TDSRFELWLLQELSRSQLGELVLCTDMLRLDVQPLRNQCQGS*KYTCF 306
           +D RF++  LQ++  +  G ++    M  LDV   R Q Q S  + CF
Sbjct: 82  SDPRFQIRPLQQVISACTGAMITACFMTPLDVIKTRMQSQQSPAHKCF 129


>AE013599-661|AAF59082.2| 1226|Drosophila melanogaster CG30361-PB,
           isoform B protein.
          Length = 1226

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 15/50 (30%), Positives = 30/50 (60%)
 Frame = +2

Query: 38  RHRGESNVLDNRENTFKG*IFPRKQRQDKVFLRRGSHRRRWKSYSRTGDF 187
           +HRG+S+   +R++ ++  +   +QRQ     R G H R+W S+ ++ D+
Sbjct: 79  QHRGKSHARKHRQSHYE--MLELEQRQQ----RMGKHWRQWMSHLQSPDY 122


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,328,734
Number of Sequences: 53049
Number of extensions: 745177
Number of successful extensions: 1763
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)