Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00828
         (718 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family...    90   1e-18
At1g22090.1 68414.m02762 expressed protein contains Pfam profile...    31   1.0  
At5g39500.1 68418.m04783 pattern formation protein, putative sim...    29   2.3  
At5g01540.1 68418.m00069 lectin protein kinase, putative similar...    28   5.4  
At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9 ...    28   5.4  
At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9 ...    28   5.4  
At1g73810.1 68414.m08546 expressed protein contains Pfam profile...    28   5.4  
At5g23910.1 68418.m02808 kinesin motor protein-related                 28   7.1  
At3g30230.1 68416.m03820 myosin heavy chain-related similar to M...    28   7.1  
At2g16570.1 68415.m01900 amidophosphoribosyltransferase / glutam...    27   9.4  

>At2g01490.1 68415.m00072 phytanoyl-CoA dioxygenase (PhyH) family
           protein contains Pfam profile PF05721: Phytanoyl-CoA
           dioxygenase (PhyH); weak similarity to Phytanoyl-CoA
           dioxygenase, peroxisomal precursor (EC 1.14.11.18)
           (Phytanoyl-CoA alpha-hydroxylase) (PhyH) (Phytanic acid
           oxidase) (Swiss-Prot:O14832) [Homo sapiens]
          Length = 283

 Score = 90.2 bits (214), Expect = 1e-18
 Identities = 37/63 (58%), Positives = 47/63 (74%)
 Frame = +2

Query: 263 SICKELGFIEPAVVQSMYIFKNPGIGSEVVAHQDATYLYTEPTPPVGFWIALEEATVQNG 442
           S+   LG+  P V+QSMYIFK PGIG EVV HQD +++YT+P    G WIALE++T+ NG
Sbjct: 122 SLASSLGYRRPVVMQSMYIFKQPGIGGEVVPHQDNSFVYTDPQSCTGLWIALEDSTLVNG 181

Query: 443 CLW 451
           CLW
Sbjct: 182 CLW 184



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/81 (45%), Positives = 48/81 (59%)
 Frame = +3

Query: 39  DIEERATFSTTEKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTVEPEISLNKVGHALHL 218
           D    + FST  + H  D YF ES +KI  FFEE A   DG L    ++S+NKVGHALH 
Sbjct: 47  DCSVSSIFSTKNQKHTTDNYFFESAEKISFFFEEKAFGDDGKLKQPKQLSINKVGHALHE 106

Query: 219 LHPIFRCYTYSEA*RAFAKSL 281
           L P+++ +TYS    + A SL
Sbjct: 107 LDPLYKDFTYSSKFSSLASSL 127



 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 26/67 (38%), Positives = 42/67 (62%)
 Frame = +1

Query: 517 DEALIYDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHAYTFHVVETYN 696
           D  + +D+P+  Y Q  F  I +  G+ I +HG+++H+S  N S KSRHAY+ HVVE+  
Sbjct: 202 DNGITFDQPSPSYEQKDFVSIEMKAGSLIAIHGDLIHQSFENLSSKSRHAYSLHVVESDG 261

Query: 697 NLYSTEN 717
             ++ +N
Sbjct: 262 CKWAKDN 268


>At1g22090.1 68414.m02762 expressed protein contains Pfam profile
           PF04776: Protein of unknown function (DUF626)
          Length = 329

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 27  ENLPDIEERATFSTTEKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTV 173
           + LPD      F  T++ HL  +  L  ND IR + E   +  D  LTV
Sbjct: 152 DELPDWPSEIAFDDTKRFHLVKESELRDNDWIRLYLELTLVAHDRFLTV 200


>At5g39500.1 68418.m04783 pattern formation protein, putative
           similar to SP|Q42510 Pattern formation protein EMB30
           {Arabidopsis thaliana}; contains Pfam profile PF01369:
           Sec7 domain
          Length = 1443

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
 Frame = -3

Query: 491 NVCALL-TCESLETATDSRFELWLLQELSRSQLGELVLCTDMLRLDVQPLRNQCQ 330
           ++C ++ TC  +   + S+ EL  LQ ++R  + EL+ C       + PL N+C+
Sbjct: 183 DICTIVNTCLRVVHQSSSKSEL--LQRIARHTMHELIRCIFSQLPFISPLANECE 235


>At5g01540.1 68418.m00069 lectin protein kinase, putative similar to
           receptor lectin kinase 3 [Arabidopsis thaliana]
           gi|4100060|gb|AAD00733; contains protein kinase domain,
           Pfam:PF00069; contains legume lectins alpha and beta
           domains, Pfam:PF00138 and Pfam:PF00139
          Length = 682

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/56 (25%), Positives = 25/56 (44%)
 Frame = +3

Query: 12  GLEFTENLPDIEERATFSTTEKTHLKDKYFLESNDKIRCFFEEGAIDADGNLTVEP 179
           GL +     D++E   +   +  + K+ + LES + I+   E        N+TV P
Sbjct: 171 GLNYNSRTSDLQEPVVYYNNDDHNKKEDFQLESGNPIQALLEYDGATQMLNVTVYP 226


>At1g80490.2 68414.m09430 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 144 AIDADGNLTVEPEISLNKVGHAL 212
           AIDADG L   P I  NK G  L
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLL 656


>At1g80490.1 68414.m09429 WD-40 repeat family protein contains 9
           WD-40 repeats domain (PF00400) (6 weak)
          Length = 1120

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +3

Query: 144 AIDADGNLTVEPEISLNKVGHAL 212
           AIDADG L   P I  NK G  L
Sbjct: 634 AIDADGGLQASPRIRFNKEGSLL 656


>At1g73810.1 68414.m08546 expressed protein contains Pfam profile
           PF03267: Arabidopsis protein of unknown function, DUF266
          Length = 418

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 4/48 (8%)
 Frame = +2

Query: 77  NTFKG*IFPRKQRQDKV----FLRRGSHRRRWKSYSRTGDFIKQGRSR 208
           +TF   +FP K     +    + RRG H R++   S TG+F+++ R+R
Sbjct: 332 STFVHAMFPGKNANRSLTWTDWSRRGPHPRKYTRRSVTGEFLRRVRNR 379


>At5g23910.1 68418.m02808 kinesin motor protein-related 
          Length = 665

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = +3

Query: 39  DIEERATFSTTEKTHLKD-KYFLESNDKIRCFFEEGAIDADGNLTVEPEISLNKV 200
           ++ ER T   T  + +K  K F E+ND ++C      ++    + ++  IS +KV
Sbjct: 289 NVTERKTKINTATSAIKARKLFGEANDSVKCKNSSKKVEGKAKMVLKKGISTSKV 343


>At3g30230.1 68416.m03820 myosin heavy chain-related similar to
           Myosin heavy chain, non-muscle (Zipper protein) (Myosin
           II)(SP:Q99323) {Drosophila melanogaster}
          Length = 527

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +1

Query: 343 RSGCTSRRNISVHRTNSP 396
           R GC+ RRN+S HR NSP
Sbjct: 160 RGGCSPRRNLSPHR-NSP 176


>At2g16570.1 68415.m01900 amidophosphoribosyltransferase / glutamine
           phosphoribosylpyrophosphate amidotransferase /
           phosphoribosyldiphosphate 5-amidotransferase identical
           to amidophosphoribosyltransferase [Arabidopsis thaliana]
           GI:469193; identical to cDNA
           amidophosphoribosyltransferase GI:469192
          Length = 566

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +1

Query: 529 IYDKPAAVYPQSSFTPIPVSKGTCILLHGNVVHKSSHNKSDKSRHA-YTFH 678
           ++ KP    P  S  P P+S     L+HG   + SS + S+ + H  + +H
Sbjct: 29  LFPKPFLKPPHLSLLPSPLSSPPPSLIHGVSSYFSSPSPSEDNSHTPFDYH 79


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,529,607
Number of Sequences: 28952
Number of extensions: 352669
Number of successful extensions: 973
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)