Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00827
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    31   0.13 
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma...    26   6.3  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.4  

>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = +3

Query: 549 QLKLNFRYVFNPNRNIVNYF*SLSRYFTL*YFLFRN*GVKYVNKYDLIRK 698
           Q  LNF  +F+P   ++ +F S S   TL  FL     + +VNK+ L+ K
Sbjct: 158 QFLLNFACLFSPAHALILWFYSTSLRVTLLTFLLSFTTLHFVNKFSLLLK 207


>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 835

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = -1

Query: 145 LPNCLVICYEYTCCCFLHRDS 83
           + +CL +C EY   C +H D+
Sbjct: 499 IDSCLSVCDEYDVQCLIHTDT 519


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = +2

Query: 458  PTFNNQICIIKI*SSALTYRNYTVIFLNRGPTQIKFSLCF 577
            PTF++ + ++K  +  +TY  Y  I L     +I     F
Sbjct: 2586 PTFHSMVAVVKNDTYGVTYVKYATILLQELTIEIDEDFAF 2625


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,687,401
Number of Sequences: 5004
Number of extensions: 51840
Number of successful extensions: 121
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)