Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00827
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0583 - 4174037-4174114,4174215-4174352,4174447-4174555,417...    30   1.6  
08_01_0482 + 4236865-4236928,4237112-4237329                           29   3.8  
07_03_0984 - 23131468-23131679,23132082-23132209,23132300-231323...    28   8.7  

>06_01_0583 -
           4174037-4174114,4174215-4174352,4174447-4174555,
           4174857-4174945,4175218-4175307,4175570-4175653,
           4177508-4177759
          Length = 279

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 342 RSKQIIWSKTVNAY*KVAIQICGCILLYSSFMLNFHSFHQ 461
           RSK+  WS+TV      A+Q+  C+ +Y++F L    FH+
Sbjct: 8   RSKRPPWSRTV------AVQVALCVAMYAAFSLGEPRFHR 41


>08_01_0482 + 4236865-4236928,4237112-4237329
          Length = 93

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -1

Query: 130 VICYEYTCCCFLHRD 86
           ++CY Y CCC L RD
Sbjct: 8   LVCYCYPCCCLLARD 22


>07_03_0984 -
           23131468-23131679,23132082-23132209,23132300-23132365,
           23134421-23134515,23135292-23135340,23135428-23135487,
           23135580-23135701,23135799-23135840,23135944-23135992,
           23136095-23136166,23136638-23136738,23136835-23136910,
           23137002-23137081,23137196-23137307,23137391-23137454,
           23137540-23137603,23138544-23138570
          Length = 472

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 300 KNIVTLFKMLLTTIRSKQIIWSKTVNAY 383
           K+IVTL   LLT+ ++  I+WSK    Y
Sbjct: 52  KSIVTLALTLLTSSQAILIVWSKRAGKY 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,914,791
Number of Sequences: 37544
Number of extensions: 254292
Number of successful extensions: 411
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 410
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)