Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00827
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55031| Best HMM Match : GRP (HMM E-Value=5.3) 34 0.10
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06) 29 3.9
SB_43339| Best HMM Match : SAC3_GANP (HMM E-Value=1.8e-09) 29 3.9
SB_6772| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36) 28 6.7
SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2) 28 6.7
SB_37414| Best HMM Match : GLTT (HMM E-Value=0.00024) 28 6.7
SB_10938| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
>SB_55031| Best HMM Match : GRP (HMM E-Value=5.3)
Length = 487
Score = 34.3 bits (75), Expect = 0.10
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 395 NSNLWLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYT 526
N LWLH+ + +V L+SPT ++ C+ + ++AL YT
Sbjct: 330 NYQLWLHLPPYLIFVDDPLVSPTPDSITCVTRFINTALIVTTYT 373
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H IL Y + + SP F IC I+ +S+L ++ IF
Sbjct: 240 CQIEFQNSSLAVFTHSEILEGYQAIGIPSPVFITSICQIEFQNSSLAVFTHSKIF 294
>SB_55992| Best HMM Match : 7tm_1 (HMM E-Value=7.6e-06)
Length = 462
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = -1
Query: 160 FIIFFLPNCLVICYEYTCCCFLHRDSGVCGVLFPLLLRVVHLN 32
F +F P L+I + CC + D + VL P++ VV +N
Sbjct: 98 FFAYFCPKILLISCIFKCCAAI--DVNIRKVLTPIMTNVVDIN 138
>SB_43339| Best HMM Match : SAC3_GANP (HMM E-Value=1.8e-09)
Length = 657
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -1
Query: 166 NGFIIFFLPNCLVICYEYTCCCFLHR 89
N F+ FF LV C +Y C C LHR
Sbjct: 419 NNFVRFFK---LVKCADYMCACILHR 441
>SB_6772| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H I+ Y + + SP F IC I+ S+L ++ IF
Sbjct: 135 CQIEFQNSSLAVFTHSKIIEGYQAIGIPSPVFIKSICQIEFQKSSLAVFTHSKIF 189
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H I Y + + SP F IC I+ +S+L ++ IF
Sbjct: 63 CQIEFQNSSLAVFTHSKIFEGYQAIGIPSPVFIKSICQIEFQNSSLAVFTHSKIF 117
>SB_52239| Best HMM Match : Adaptin_N (HMM E-Value=9.9e-36)
Length = 723
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H I Y + + SP F IC I+ +S+L ++ IF
Sbjct: 649 CQIEFQNSSLAVFTHSKIFEKYQAIGIPSPVFITSICQIEFQNSSLAVFTHSEIF 703
>SB_43183| Best HMM Match : MethyltransfD12 (HMM E-Value=2)
Length = 604
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H I Y + + SP F IC I+ +S+L ++ IF
Sbjct: 381 CQIEFQNSSLAVFTHSKIFEGYQAIGIPSPVFITSICQIEFQNSSLAVFTHSKIF 435
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H I Y + + SP F IC I+ +S+L ++ IF
Sbjct: 417 CQIEFQNSSLAVFTHSKIFEGYQAIGIPSPVFITSICQIEFQNSSLAVFTHSKIF 471
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H I Y + + SP F IC I+ +S+L ++ IF
Sbjct: 453 CQIEFQNSSLAVFTHSKIFEGYQAIGIPSPVFIKSICQIEFQNSSLAVFTHSKIF 507
>SB_37414| Best HMM Match : GLTT (HMM E-Value=0.00024)
Length = 286
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H I Y + + SP F IC I+ +S+L ++ IF
Sbjct: 17 CQIEFQNSSLAVFTHSKIFEGYQAIGIPSPVFIKSICQIEFQNSSLAVFTHSKIF 71
>SB_10938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 204
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
Frame = +2
Query: 377 CLLESCNSNL--WLHIVILIFYVKLSLISPTFNNQICIIKI*SSALTYRNYTVIF 535
C +E NS+L + H I Y + + SP F IC I+ +S+L ++ IF
Sbjct: 53 CQIEFQNSSLAVFTHSKIFEGYQAIGIPSPVFIKSICQIEFQNSSLAVFTHSKIF 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,789,386
Number of Sequences: 59808
Number of extensions: 343836
Number of successful extensions: 580
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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