Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00827
(730 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ013303-1|AAY67796.1| 532|Homo sapiens RAB11-FIP2 long isoform... 39 0.016
BC075074-1|AAH75074.1| 512|Homo sapiens RAB11 family interactin... 39 0.016
BC075073-1|AAH75073.1| 512|Homo sapiens RAB11 family interactin... 39 0.016
AY037299-1|AAK68635.1| 512|Homo sapiens nRip11 protein. 39 0.016
AB023158-1|BAA76785.2| 533|Homo sapiens KIAA0941 protein protein. 39 0.016
DQ236342-1|ABB43161.1| 649|Homo sapiens RAB11-family interactin... 37 0.064
DQ083995-1|AAY86040.1| 501|Homo sapiens Rab11-family interactin... 37 0.064
BC077720-1|AAH77720.1| 649|Homo sapiens RAB11 family interactin... 37 0.064
BC035013-1|AAH35013.1| 652|Homo sapiens RAB11 family interactin... 37 0.064
AY280968-1|AAQ18786.1| 1283|Homo sapiens Rab11-family interactin... 37 0.064
AY280966-1|AAQ18784.1| 612|Homo sapiens Rab11-family interactin... 37 0.064
AK122583-1|BAC56924.1| 681|Homo sapiens FLJ00294 protein protein. 37 0.064
AF368294-1|AAM09571.1| 649|Homo sapiens Rab-coupling protein pr... 37 0.064
AF334812-1|AAK20892.1| 653|Homo sapiens Rab11 interacting prote... 37 0.064
AF153085-1|AAF34356.1| 549|Homo sapiens phosphoprotein pp75 pro... 37 0.064
AC012366-4|AAY14746.1| 131|Homo sapiens unknown protein. 37 0.064
AB020664-1|BAA74880.1| 733|Homo sapiens KIAA0857 protein protein. 37 0.064
AJ000522-1|CAA04165.1| 1179|Homo sapiens axonemal dynein heavy c... 30 7.4
>DQ013303-1|AAY67796.1| 532|Homo sapiens RAB11-FIP2 long isoform
protein.
Length = 532
Score = 39.1 bits (87), Expect = 0.016
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNPY 93
++LE+Y+D LL+RVME TP IL+ PY
Sbjct: 495 RELEDYIDNLLVRVMEETPSILRVPY 520
>BC075074-1|AAH75074.1| 512|Homo sapiens RAB11 family interacting
protein 2 (class I) protein.
Length = 512
Score = 39.1 bits (87), Expect = 0.016
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNPY 93
++LE+Y+D LL+RVME TP IL+ PY
Sbjct: 475 RELEDYIDNLLVRVMEETPSILRVPY 500
>BC075073-1|AAH75073.1| 512|Homo sapiens RAB11 family interacting
protein 2 (class I) protein.
Length = 512
Score = 39.1 bits (87), Expect = 0.016
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNPY 93
++LE+Y+D LL+RVME TP IL+ PY
Sbjct: 475 RELEDYIDNLLVRVMEETPSILRVPY 500
>AY037299-1|AAK68635.1| 512|Homo sapiens nRip11 protein.
Length = 512
Score = 39.1 bits (87), Expect = 0.016
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNPY 93
++LE+Y+D LL+RVME TP IL+ PY
Sbjct: 475 RELEDYIDNLLVRVMEETPSILRVPY 500
>AB023158-1|BAA76785.2| 533|Homo sapiens KIAA0941 protein protein.
Length = 533
Score = 39.1 bits (87), Expect = 0.016
Identities = 16/26 (61%), Positives = 22/26 (84%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNPY 93
++LE+Y+D LL+RVME TP IL+ PY
Sbjct: 496 RELEDYIDNLLVRVMEETPSILRVPY 521
>DQ236342-1|ABB43161.1| 649|Homo sapiens RAB11-family interacting
protein 1C protein.
Length = 649
Score = 37.1 bits (82), Expect = 0.064
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 10 KTKDLENYLDELLLRVMETTPRILQNP 90
+ ++LE+Y+D LL+RVME TP IL+ P
Sbjct: 613 QVRELEDYIDNLLVRVMEETPNILRIP 639
>DQ083995-1|AAY86040.1| 501|Homo sapiens Rab11-family interacting
protein 1D protein.
Length = 501
Score = 37.1 bits (82), Expect = 0.064
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 10 KTKDLENYLDELLLRVMETTPRILQNP 90
+ ++LE+Y+D LL+RVME TP IL+ P
Sbjct: 465 QVRELEDYIDNLLVRVMEETPNILRIP 491
>BC077720-1|AAH77720.1| 649|Homo sapiens RAB11 family interacting
protein 1 (class I) protein.
Length = 649
Score = 37.1 bits (82), Expect = 0.064
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 10 KTKDLENYLDELLLRVMETTPRILQNP 90
+ ++LE+Y+D LL+RVME TP IL+ P
Sbjct: 613 QVRELEDYIDNLLVRVMEETPNILRIP 639
>BC035013-1|AAH35013.1| 652|Homo sapiens RAB11 family interacting
protein 5 (class I) protein.
Length = 652
Score = 37.1 bits (82), Expect = 0.064
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNP 90
++LE+Y+D LL+R+MET+P +LQ P
Sbjct: 623 QELESYIDRLLVRIMETSPTLLQIP 647
>AY280968-1|AAQ18786.1| 1283|Homo sapiens Rab11-family interacting
protein 1B protein.
Length = 1283
Score = 37.1 bits (82), Expect = 0.064
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 10 KTKDLENYLDELLLRVMETTPRILQNP 90
+ ++LE+Y+D LL+RVME TP IL+ P
Sbjct: 1247 QVRELEDYIDNLLVRVMEETPNILRIP 1273
>AY280966-1|AAQ18784.1| 612|Homo sapiens Rab11-family interacting
protein 1A protein.
Length = 612
Score = 37.1 bits (82), Expect = 0.064
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 10 KTKDLENYLDELLLRVMETTPRILQNP 90
+ ++LE+Y+D LL+RVME TP IL+ P
Sbjct: 576 QVRELEDYIDNLLVRVMEETPNILRIP 602
>AK122583-1|BAC56924.1| 681|Homo sapiens FLJ00294 protein protein.
Length = 681
Score = 37.1 bits (82), Expect = 0.064
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 10 KTKDLENYLDELLLRVMETTPRILQNP 90
+ ++LE+Y+D LL+RVME TP IL+ P
Sbjct: 645 QVRELEDYIDNLLVRVMEETPNILRIP 671
>AF368294-1|AAM09571.1| 649|Homo sapiens Rab-coupling protein
protein.
Length = 649
Score = 37.1 bits (82), Expect = 0.064
Identities = 15/27 (55%), Positives = 22/27 (81%)
Frame = +1
Query: 10 KTKDLENYLDELLLRVMETTPRILQNP 90
+ ++LE+Y+D LL+RVME TP IL+ P
Sbjct: 613 QVRELEDYIDNLLVRVMEETPNILRIP 639
>AF334812-1|AAK20892.1| 653|Homo sapiens Rab11 interacting protein
Rip11a protein.
Length = 653
Score = 37.1 bits (82), Expect = 0.064
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNP 90
++LE+Y+D LL+R+MET+P +LQ P
Sbjct: 624 QELESYIDRLLVRIMETSPTLLQIP 648
>AF153085-1|AAF34356.1| 549|Homo sapiens phosphoprotein pp75
protein.
Length = 549
Score = 37.1 bits (82), Expect = 0.064
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNP 90
++LE+Y+D LL+R+MET+P +LQ P
Sbjct: 520 QELESYIDRLLVRIMETSPTLLQIP 544
>AC012366-4|AAY14746.1| 131|Homo sapiens unknown protein.
Length = 131
Score = 37.1 bits (82), Expect = 0.064
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNP 90
++LE+Y+D LL+R+MET+P +LQ P
Sbjct: 102 QELESYIDRLLVRIMETSPTLLQIP 126
>AB020664-1|BAA74880.1| 733|Homo sapiens KIAA0857 protein protein.
Length = 733
Score = 37.1 bits (82), Expect = 0.064
Identities = 14/25 (56%), Positives = 22/25 (88%)
Frame = +1
Query: 16 KDLENYLDELLLRVMETTPRILQNP 90
++LE+Y+D LL+R+MET+P +LQ P
Sbjct: 704 QELESYIDRLLVRIMETSPTLLQIP 728
>AJ000522-1|CAA04165.1| 1179|Homo sapiens axonemal dynein heavy
chain protein.
Length = 1179
Score = 30.3 bits (65), Expect = 7.4
Identities = 12/44 (27%), Positives = 26/44 (59%)
Frame = +3
Query: 306 IVTLFKMLLTTIRSKQIIWSKTVNAY*KVAIQICGCILLYSSFM 437
++ L L+ + S+ I W+++V + + +CG +LL S+F+
Sbjct: 37 VILLANRLVGGLASENIRWAESVENFRSQGVTLCGDVLLISAFV 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,013,514
Number of Sequences: 237096
Number of extensions: 1678688
Number of successful extensions: 2147
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 2072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2147
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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