Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00826
(452 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos... 29 0.25
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 0.58
SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog Taz1|Schizosacc... 28 0.77
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.0
SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S... 27 1.0
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 27 1.0
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 27 1.0
SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe... 27 1.3
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb... 27 1.3
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 27 1.3
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 26 3.1
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 3.1
SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr 2|... 26 3.1
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa... 25 4.1
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 25 5.4
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch... 25 5.4
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 25 5.4
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 25 7.2
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 25 7.2
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 24 9.5
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 24 9.5
SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c... 24 9.5
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 24 9.5
SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4 |S... 24 9.5
>SPBC17D11.05 |tif32||translation initiation factor
eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
Length = 932
Score = 29.5 bits (63), Expect = 0.25
Identities = 18/60 (30%), Positives = 32/60 (53%)
Frame = +2
Query: 266 QVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFEPATVTELTDQE 445
+ +++ A+ A +EANR E+EEA KR I++R R A + E + E +++
Sbjct: 788 EAIREAEEEAARAAEEEANRELHEQEEAQKR--AIEERTRAAREAKEREQREMAEKLERQ 845
>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 608
Score = 28.3 bits (60), Expect = 0.58
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 81 VPVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLL 197
V Y LN+K+N+ N PE+ S L + +KD+L
Sbjct: 500 VEKVYDLNSKINLKNIPEQSISRLSTLKWNEGTTIKDVL 538
>SPAC16A10.07c |taz1|myb1, myb|human TRF ortholog
Taz1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 663
Score = 27.9 bits (59), Expect = 0.77
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 254 REWEQVVKDTFYTHAKKACDE--ANRIKKEKEEADKRLKEIQQRKEQERLANDFEPATVT 427
R++ + + + AK + ANR K + D +E EQ+ L+ DF P V
Sbjct: 458 RDFSHTLSKSLKSRAKSLSQKEAANRSKLIAKRGDNLRREASLSSEQDDLSEDFPP--VR 515
Query: 428 ELTDQEA 448
E +QE+
Sbjct: 516 ESDEQES 522
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.5 bits (58), Expect = 1.0
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 299 KKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFEPATVTELTDQEAE 451
+K + ++KK+++EAD+ +QR +E E E D+E E
Sbjct: 666 QKQKEREKKLKKQQQEADREKMAREQRLREEEEKRILEERKRREKLDKEEE 716
Score = 26.6 bits (56), Expect = 1.8
Identities = 11/32 (34%), Positives = 21/32 (65%)
Frame = +2
Query: 296 AKKACDEANRIKKEKEEADKRLKEIQQRKEQE 391
A+KA + + + K+ ++RLK Q++K+QE
Sbjct: 625 AQKALEAKRQEEARKKREEQRLKREQEKKQQE 656
Score = 25.4 bits (53), Expect = 4.1
Identities = 13/39 (33%), Positives = 25/39 (64%)
Frame = +2
Query: 296 AKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFE 412
A++A +A K++ EEA K+ +E + ++EQE+ + E
Sbjct: 621 AEQAAQKALEAKRQ-EEARKKREEQRLKREQEKKQQELE 658
Score = 24.6 bits (51), Expect = 7.2
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 4/46 (8%)
Frame = +2
Query: 323 RIKKEKEEADKRLK----EIQQRKEQERLANDFEPATVTELTDQEA 448
R K++K + K+LK E +QR+E ERLA + +EA
Sbjct: 592 REKEKKRDKKKQLKLAKEEERQRREAERLAEQAAQKALEAKRQEEA 637
>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
Tor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2337
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 256 PSRPPVKKSVFLDKKLTIVFSRSFTPPSCCCA-IARSMESNLSGS 125
P PV + LD I+ R F PP C +ARS++S+ S S
Sbjct: 404 PPLLPVIQERLLDMLSKILSGRPFIPPGCPPQYVARSLKSSKSAS 448
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 27.5 bits (58), Expect = 1.0
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -1
Query: 227 FSRQKANYCVQQIFYAAFVLLCHS*EH-GIKSFRIVCHIYFSI 102
FSR Y V I A+ + LC + EH G KS R++ FS+
Sbjct: 138 FSRLTCAYFVLSILDASLIYLCFTSEHLGDKSTRMLFVCEFSV 180
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 27.5 bits (58), Expect = 1.0
Identities = 18/55 (32%), Positives = 28/55 (50%)
Frame = +2
Query: 245 WP*REWEQVVKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDF 409
W RE ++ D ++ + N + ++K E ++RLKEIQ KE E N F
Sbjct: 967 WLERE-RSILIDELESYRSNQFNYQNNLVQDKNELEERLKEIQ--KELEVYNNHF 1018
>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
pombe|chr mitochondrial|||Manual
Length = 248
Score = 27.1 bits (57), Expect = 1.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 90 TYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDL 194
+Y LN V N+P FDS ++ EG ++ L
Sbjct: 123 SYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQL 157
>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 814
Score = 27.1 bits (57), Expect = 1.3
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Frame = +2
Query: 269 VVKDTFYTHAKKACDEAN---RIKK-EKEEADKRLKEIQQRKEQERLANDFEPATVTELT 436
V +D F+ K CDE N IK+ K + + +Q++E+++ + + +
Sbjct: 251 VFQDNFFRDFLKVCDECNFNHNIKEFSKCDFTQMFHHFEQKREEKKSMPKEQKKAIKQKK 310
Query: 437 DQEAE 451
D+E E
Sbjct: 311 DEEEE 315
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.1 bits (57), Expect = 1.3
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +2
Query: 311 DEANRIKKEKEEADKRLKEIQQRK-EQERLANDFEPATVTE 430
+E N+ K++A L+E +++K EQ+RL+ FE T E
Sbjct: 523 EEYNKWFARKQQARVELEEQRRKKKEQDRLSGKFEKMTQKE 563
Score = 24.2 bits (50), Expect = 9.5
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 329 KKEKEEADKRLKEIQQRKEQERLANDF 409
KK K + KRL E+ E E +DF
Sbjct: 294 KKSKSDRRKRLVELDAENENENDPSDF 320
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 25.8 bits (54), Expect = 3.1
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 314 EANRIKKEKEEADKRLKEIQQRKEQERL 397
E R+K E+E K L E +++KE+ER+
Sbjct: 126 ERQRLKDEEERRKKELME-KEKKEKERI 152
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 3.1
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = +3
Query: 84 PVTYRLNTKVNMANDPERFDSMLLAMAQQHEGGVKDLLNTIVSFLSRKTD 233
P Y+L + + N+ F + + E V DL+N S+L+ D
Sbjct: 275 PAYYKLIAQEAVLNNYTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVD 324
>SPBC29A10.12 |||HMG-box variant|Schizosaccharomyces pombe|chr
2|||Manual
Length = 207
Score = 25.8 bits (54), Expect = 3.1
Identities = 9/28 (32%), Positives = 20/28 (71%)
Frame = +2
Query: 323 RIKKEKEEADKRLKEIQQRKEQERLAND 406
+ K+++EA+KR ++++ E+ERL +
Sbjct: 39 KTNKKEQEAEKRKAALERKAERERLEKE 66
>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
Msa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.4 bits (53), Expect = 4.1
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = -1
Query: 269 PAPIPFTATSEKVSFSRQKANYCVQQIFYAAFVLL 165
PAPIPF+ +S+ S + ++N VQ Y A L+
Sbjct: 271 PAPIPFSVSSDPPS-TMGRSNSAVQSPSYFAHSLV 304
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.0 bits (52), Expect = 5.4
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +2
Query: 332 KEKEEADKRLK--EIQQRKEQERLANDFE 412
K+K E DKR + E+E+L NDFE
Sbjct: 121 KDKFEKDKRAAVCPTTTKSEEEKLENDFE 149
>SPCC126.14 |prp18||U5 snRNP-associated protein
Prp18|Schizosaccharomyces pombe|chr 3|||Manual
Length = 343
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/40 (30%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +2
Query: 332 KEKEEADKRLKEIQQRK-EQERLANDFEPATVTELTDQEA 448
+EK++ D++ +E+++RK E+ERL + + ++ L ++E+
Sbjct: 42 QEKQQKDEQ-RELKKRKLEEERLKYEEKKLRISRLANKES 80
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.0 bits (52), Expect = 5.4
Identities = 12/48 (25%), Positives = 23/48 (47%)
Frame = +2
Query: 281 TFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFEPATV 424
T +T + + + E + DK LKE + + + + ND+E + V
Sbjct: 57 TSFTEQIETSETSKTQDSEGNKVDKNLKENKSIRRKRSIDNDYELSNV 104
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 24.6 bits (51), Expect = 7.2
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +2
Query: 329 KKEKEEADKRLKEIQQRKEQERLAN 403
K++ +E +R KE+++ KE++R A+
Sbjct: 42 KRKLDEIKEREKELKREKEEQRAAH 66
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 24.6 bits (51), Expect = 7.2
Identities = 11/29 (37%), Positives = 21/29 (72%)
Frame = +2
Query: 314 EANRIKKEKEEADKRLKEIQQRKEQERLA 400
EA R+K+EKE + ++ ++ +EQE++A
Sbjct: 94 EAERLKREKERQQR--EQEKKLREQEKIA 120
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 24.2 bits (50), Expect = 9.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = +2
Query: 272 VKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLA 400
++ +T KA E+ E+ R+K QR+ ERLA
Sbjct: 1204 IESNTHTPEVKATSESPSASSNLEDRAARIKAEAQRRMNERLA 1246
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 24.2 bits (50), Expect = 9.5
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Frame = +2
Query: 299 KKACDEANRIKKEKEEADKRLKE----IQQRKEQERLAN 403
KKA +E N +K++E A ++LKE +Q+ KE +R N
Sbjct: 378 KKALEELN--QKKRELAQQQLKEQELLMQKIKETDRSGN 414
>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 374
Score = 24.2 bits (50), Expect = 9.5
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = +2
Query: 260 WEQVVKDTFYTHAKKACDEANRIKKEKE-EADKRLKEIQQRKEQER 394
+EQVV + AKK + I K E + KR++ +QRK + R
Sbjct: 325 FEQVVHASAAKAAKKKVKSSGDISKLSESDQKKRMERERQRKMRRR 370
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 24.2 bits (50), Expect = 9.5
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 329 KKEKEEADKRLKEIQQRKEQERLANDFEPATVTE 430
+K + E +LK +QQ+ E ER+ + + + E
Sbjct: 349 RKSRIEFMNKLKALQQKLENERIVEEIKKNGIQE 382
>SPAC9G1.13c |||histone acetyltransferase complex subunit Swc4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 24.2 bits (50), Expect = 9.5
Identities = 14/60 (23%), Positives = 25/60 (41%)
Frame = +2
Query: 272 VKDTFYTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQERLANDFEPATVTELTDQEAE 451
+KD FY+ ++K N I L ++ KEQE + + + ++ AE
Sbjct: 142 LKDRFYSVSRKILLARNPINSMTAAQSSLLNTMEYNKEQEVIRKKYLIGLASRTPEEVAE 201
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,383,611
Number of Sequences: 5004
Number of extensions: 23415
Number of successful extensions: 157
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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