Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00826
         (452 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   2.1  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    21   4.7  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    21   8.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.3  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   8.3  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   8.3  

>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.1
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 152 PSYGTTARRRRKRSAEHNS 208
           PS   + RRRR+R+  +NS
Sbjct: 401 PSRKESGRRRRRRTPRYNS 419


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.4 bits (43), Expect = 4.7
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = -1

Query: 269 PAPIPFTATSEKVSFSRQKANYCVQQIF 186
           P P+PF  T++ +   ++   + V+ I+
Sbjct: 37  PKPVPFFGTTKDLILVKKSTAHFVKDIY 64


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 287 YTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQER 394
           Y+  +    + NR  KEK+   ++L   +++  +ER
Sbjct: 220 YSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEER 255


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 287 YTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQER 394
           Y+  +    + NR  KEK+   ++L   +++  +ER
Sbjct: 231 YSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEER 266


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 287 YTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQER 394
           Y+  +    + NR  KEK+   ++L   +++  +ER
Sbjct: 231 YSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEER 266


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 20.6 bits (41), Expect = 8.3
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +2

Query: 287 YTHAKKACDEANRIKKEKEEADKRLKEIQQRKEQER 394
           Y+  +    + NR  KEK+   ++L   +++  +ER
Sbjct: 231 YSRERSCSRDRNREYKEKDRRYEKLHNEKEKLLEER 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,008
Number of Sequences: 438
Number of extensions: 1636
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11943513
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)