Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00825
         (608 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    23   2.0  
DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   4.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   8.1  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   8.1  

>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 344 GPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTS 237
           G   N  R S+   ++  DP + +++RKN    K S
Sbjct: 117 GTNKNMRRLSTTTQNKNDDPSYWEKRRKNNEAAKRS 152


>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = -2

Query: 142 PTVFRNPIKKLYHLTSSRESTSLQ 71
           PT+ R P+K  + ++S    T+L+
Sbjct: 12  PTMARTPLKSSFSISSILPETALE 35


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 494 QQNVHNTELLGSQVNAGYRGNPRTLTPD 411
           Q+N   +  +G   N  Y G+P  ++P+
Sbjct: 426 QKNAEYSGKVGYYENNHYNGDPNYISPE 453


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 8/28 (28%), Positives = 15/28 (53%)
 Frame = -1

Query: 494 QQNVHNTELLGSQVNAGYRGNPRTLTPD 411
           Q+N   +  +G   N  Y G+P  ++P+
Sbjct: 374 QKNAEYSGKVGYYENNHYNGDPNYISPE 401


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,710
Number of Sequences: 336
Number of extensions: 2845
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15457268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)