Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00825
         (608 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces...    27   1.6  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    27   1.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   5.0  
SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    25   8.7  
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom...    25   8.7  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   8.7  

>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 711

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/44 (29%), Positives = 19/44 (43%)
 Frame = -3

Query: 606 TAAQQRVRPN*LVPTRAPD*FPPPLTSERTLSDVSRRTAERTQY 475
           +A    + P+   P R P   PPPL +   +SD     A   +Y
Sbjct: 160 SAVSTPISPDYSFPLRVPINIPPPLCTPSVVSDTFSEFASHAEY 203


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +2

Query: 104 MIQFFDGITKNGRFSLHCAFEVSSL 178
           +I FF+GIT+ GR+   C  EVSSL
Sbjct: 508 LILFFEGITEVGRY--QCDTEVSSL 530


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -1

Query: 353  NSLGPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLS 231
            +S  P  +T RSS P PH    P        +    +TS+S
Sbjct: 1243 SSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVS 1283


>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 7/18 (38%), Positives = 14/18 (77%)
 Frame = -3

Query: 72  NYYWTSKNDSEHI*LCGL 19
           +++W S++D EH+ +C L
Sbjct: 405 DFFWISQSDLEHVGMCEL 422


>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 23/94 (24%), Positives = 48/94 (51%)
 Frame = -1

Query: 326 CRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECRQEN*LRTRSAM 147
           C+SS+    R+ DP H+   R    + ++++     + +  +S+F E R  N    + + 
Sbjct: 34  CKSSTSSATRKHDPFHKLWDRLQ-PKAQSTIQRTSSLPVPSSSNFKE-RLNNIGGLKRSR 91

Query: 146 KTDRFS*SHQKTVSSNKLT*INKSSIIIGLRRTI 45
             +  S    +T ++NKL+ +  SS++  +R+TI
Sbjct: 92  TLE--SSYEDETETANKLSRV--SSLVSVIRQTI 121


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 320 SSSPGPHRRFDPRHEKEKR 264
           SS+P P RRF P   ++KR
Sbjct: 212 SSAPEPKRRFAPSKHEQKR 230


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,382,350
Number of Sequences: 5004
Number of extensions: 47513
Number of successful extensions: 112
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)