Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00825
         (608 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0083 - 20616432-20616469,20616666-20617119                       33   0.23 
09_06_0020 - 20267190-20267612,20269086-20269495,20269573-202697...    29   2.2  
05_01_0041 + 281427-281549,281671-281730,281822-281868,282013-28...    29   2.2  
03_02_0547 - 9389188-9389476,9389577-9389938                           29   2.2  
07_03_1148 - 24363952-24365086,24365178-24365361,24365438-243654...    29   3.8  
09_02_0606 - 11173521-11173922                                         28   6.7  
08_01_0187 + 1572014-1572180,1572266-1572422,1573047-1573097,157...    27   8.8  

>03_05_0083 - 20616432-20616469,20616666-20617119
          Length = 163

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +3

Query: 294 PPMRSRT*RPASVRPRAQGILGPTH*MSPLHSHTRR 401
           PP+RS + R A   P A G++   H + PLH H RR
Sbjct: 47  PPVRSASIRAAGSSPAALGLIRACH-VRPLHGHHRR 81


>09_06_0020 -
           20267190-20267612,20269086-20269495,20269573-20269747,
           20270833-20271066,20271164-20271265,20271354-20272091,
           20272204-20272321,20272417-20272667,20272768-20272932
          Length = 871

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -1

Query: 410 GDRTSGVRVQGRHLVGGP*NSLG-PRSNTCRSSSPG--PHRRFDPRHEKEKRKNGTRIKT 240
           GD    VR+  RH VG P    G   S T     PG  P R FD   ++++R +   +  
Sbjct: 646 GDGEDKVRMMARHSVGAPGEPPGVVLSATTSVRLPGTLPQRVFDYLRDEQRRGDWDILAN 705

Query: 239 SLSIQDQIYIKK 204
             ++Q+  +I K
Sbjct: 706 GEAMQEMDHIAK 717


>05_01_0041 +
           281427-281549,281671-281730,281822-281868,282013-282089,
           285368-285440,286193-286281,286665-286711,286805-286885,
           287011-287179,287381-287600,287679-287744,288194-288310,
           288591-288628,288935-289032
          Length = 434

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 21/76 (27%), Positives = 32/76 (42%)
 Frame = -1

Query: 323 RSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECRQEN*LRTRSAMK 144
           RS SP P R   PRH   +R  G+ I+    +  +        +S  R+   LR RS   
Sbjct: 315 RSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPLPRRRLTPPRRMWSPPRRPQSLRHRSRSP 374

Query: 143 TDRFS*SHQKTVSSNK 96
             R   S  +++S  +
Sbjct: 375 IHRPIRSPSRSISPRR 390


>03_02_0547 - 9389188-9389476,9389577-9389938
          Length = 216

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/46 (34%), Positives = 21/46 (45%)
 Frame = -1

Query: 410 GDRTSGVRVQGRHLVGGP*NSLGPRSNTCRSSSPGPHRRFDPRHEK 273
           G R SG RV  RHL G P  +  P      S +PG       +H++
Sbjct: 18  GGRRSGHRVHARHLPGLPTLAAAPARTNGSSWAPGKTEHCTAQHKR 63


>07_03_1148 -
           24363952-24365086,24365178-24365361,24365438-24365474,
           24365585-24365818
          Length = 529

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 269 KRKNGTRIKTSLSIQDQIYIKKASSFSECR 180
           K  N  RI+   S+QDQ+  K  S++ +CR
Sbjct: 90  KAFNSLRIRLGGSLQDQVTYKVGSNYGDCR 119


>09_02_0606 - 11173521-11173922
          Length = 133

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 417 PGRRSDVGCESAGETFSGWALKFLGPAV*H 328
           P  R+ VGC+ +  T  GWA + + P + H
Sbjct: 34  PHGRAGVGCDESRPTGDGWAGELVQPLISH 63


>08_01_0187 +
           1572014-1572180,1572266-1572422,1573047-1573097,
           1573371-1573463,1573595-1573681
          Length = 184

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -2

Query: 562 AGAGLVPAAINIRANSVRRF*KNSRTYTILNCWDLKLMQGTAGTP 428
           A  G  P    + A ++ +F K   T+   N WD K + G+ G P
Sbjct: 30  AALGNCPLVAAVLAGAIAQFIKVLTTWYKENRWDAKQLVGSGGMP 74


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,285,479
Number of Sequences: 37544
Number of extensions: 349757
Number of successful extensions: 787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 787
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1454766756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)