Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00825
         (608 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  
SB_40656| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_49776| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 290

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = -1

Query: 338 RSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQ-DQIYIKKASSFSECRQEN*LR 162
           ++N  R S PG  + F P+   +K KN  +I   ++   D    K  S+ S+   +  L 
Sbjct: 198 KNNMIRRSCPGKAKTFTPKKNIDKEKNAVQILNDIAANVDNRDDKMLSAISKLIGKKDLF 257

Query: 161 TRSAMKTD 138
            +++ K D
Sbjct: 258 FKNSKKDD 265


>SB_47082| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 908

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
 Frame = -1

Query: 341 PRSNTCRSSSPGPHR-RFDPRHEKEKRKNGT 252
           P+SNT  SSS    + + +PR  K KRK  T
Sbjct: 483 PKSNTTHSSSRTSRQAKTEPRETKRKRKTST 513


>SB_40656| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 492

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 447 RVPREPPYSDPGRRSDVGCESAGETFSGW 361
           RV +   Y  PG R    C+ +GE F GW
Sbjct: 206 RVFQADEYFAPGERVTRVCQVSGEPFEGW 234


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,317,535
Number of Sequences: 59808
Number of extensions: 396846
Number of successful extensions: 831
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1487884875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)