Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00825
         (608 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC011002-1|AAH11002.2|  319|Homo sapiens LOC113230 protein protein.    31   4.2  
BC110367-1|AAI10368.1| 1047|Homo sapiens chromosome 15 open read...    30   5.5  
BC011379-1|AAH11379.2| 1047|Homo sapiens chromosome 15 open read...    30   5.5  
AK128205-1|BAC87324.1| 1047|Homo sapiens protein ( Homo sapiens ...    30   5.5  
AK125604-1|BAC86215.1| 1047|Homo sapiens protein ( Homo sapiens ...    30   5.5  
BC009395-1|AAH09395.1|  452|Homo sapiens IRF3 protein protein.         30   7.3  
BC000660-1|AAH00660.1|  452|Homo sapiens IRF3 protein protein.         30   7.3  

>BC011002-1|AAH11002.2|  319|Homo sapiens LOC113230 protein protein.
          Length = 319

 Score = 30.7 bits (66), Expect = 4.2
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 1/73 (1%)
 Frame = -1

Query: 479 NTELLGSQVNAGYRG-NPRTLTPDGDRTSGVRVQGRHLVGGP*NSLGPRSNTCRSSSPGP 303
           + E  G    AG+    P    P         VQG+H         GP++++ RS S  P
Sbjct: 28  DAESPGLSTAAGFESPEPGRDDPGPSEAQRAEVQGQH------PPPGPKTSSSRSGSEAP 81

Query: 302 HRRFDPRHEKEKR 264
           H RF P  E  +R
Sbjct: 82  HLRFPPCPEAPQR 94


>BC110367-1|AAI10368.1| 1047|Homo sapiens chromosome 15 open reading
           frame 39 protein.
          Length = 1047

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -1

Query: 515 CPTFLEEQQNVHNTELLGSQVNAGYRGNPRTLTPDGDRTSGVRVQGRHLVGGP*NSLGPR 336
           C  FLE+ Q +H+T  L S+    Y  N +    +G   S    Q    +G P    GP 
Sbjct: 210 CQPFLEKYQTIHSTGFLASRYTGPYPRNSKQAMSEG--PSSPWTQLAQPLGPPCQDTGP- 266

Query: 335 SNTCRSSSPGPH 300
           ++      P PH
Sbjct: 267 THYPPPHHPPPH 278


>BC011379-1|AAH11379.2| 1047|Homo sapiens chromosome 15 open reading
           frame 39 protein.
          Length = 1047

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -1

Query: 515 CPTFLEEQQNVHNTELLGSQVNAGYRGNPRTLTPDGDRTSGVRVQGRHLVGGP*NSLGPR 336
           C  FLE+ Q +H+T  L S+    Y  N +    +G   S    Q    +G P    GP 
Sbjct: 210 CQPFLEKYQTIHSTGFLASRYTGPYPRNSKQAMSEG--PSSPWTQLAQPLGPPCQDTGP- 266

Query: 335 SNTCRSSSPGPH 300
           ++      P PH
Sbjct: 267 THYPPPHHPPPH 278


>AK128205-1|BAC87324.1| 1047|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46337 fis, clone TESTI4046245. ).
          Length = 1047

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -1

Query: 515 CPTFLEEQQNVHNTELLGSQVNAGYRGNPRTLTPDGDRTSGVRVQGRHLVGGP*NSLGPR 336
           C  FLE+ Q +H+T  L S+    Y  N +    +G   S    Q    +G P    GP 
Sbjct: 210 CQPFLEKYQTIHSTGFLASRYTGPYPRNSKQAMSEG--PSSPWTQLAQPLGPPCQDTGP- 266

Query: 335 SNTCRSSSPGPH 300
           ++      P PH
Sbjct: 267 THYPPPHHPPPH 278


>AK125604-1|BAC86215.1| 1047|Homo sapiens protein ( Homo sapiens
           cDNA FLJ43616 fis, clone SPLEN2016554. ).
          Length = 1047

 Score = 30.3 bits (65), Expect = 5.5
 Identities = 21/72 (29%), Positives = 30/72 (41%)
 Frame = -1

Query: 515 CPTFLEEQQNVHNTELLGSQVNAGYRGNPRTLTPDGDRTSGVRVQGRHLVGGP*NSLGPR 336
           C  FLE+ Q +H+T  L S+    Y  N +    +G   S    Q    +G P    GP 
Sbjct: 210 CQPFLEKYQTIHSTGFLASRYTGPYPRNSKQAMSEG--PSSPWTQLAQPLGPPCQDTGP- 266

Query: 335 SNTCRSSSPGPH 300
           ++      P PH
Sbjct: 267 THYPPPHHPPPH 278


>BC009395-1|AAH09395.1|  452|Homo sapiens IRF3 protein protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 380 GRHLVGGP*NSLGPRSNTCRSSSPGPH 300
           G H   GP   L PRS+ C S+ P PH
Sbjct: 422 GGHGFPGPWGDLSPRSSWCASNPPVPH 448


>BC000660-1|AAH00660.1|  452|Homo sapiens IRF3 protein protein.
          Length = 452

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 380 GRHLVGGP*NSLGPRSNTCRSSSPGPH 300
           G H   GP   L PRS+ C S+ P PH
Sbjct: 422 GGHGFPGPWGELSPRSSWCASNPPVPH 448


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,807,062
Number of Sequences: 237096
Number of extensions: 1827836
Number of successful extensions: 12946
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12934
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6466646650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)