Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00825
         (608 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          28   0.062
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          25   0.58 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          25   0.58 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          25   0.58 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    25   0.58 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          24   1.0  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    23   3.1  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    23   3.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   7.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.4  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 28.3 bits (60), Expect = 0.062
 Identities = 24/88 (27%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = -1

Query: 353 NSLGPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECR-- 180
           NSLG RS + + +S    R  D RHE          ++    + + Y KK   + +    
Sbjct: 215 NSLGSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNV 274

Query: 179 QEN*LRTRSAMKTDRFS*SHQKTVSSNK 96
           +E  LR R++ +  R+S S ++   S K
Sbjct: 275 EEKHLRERTSRR--RYSRSREREQKSYK 300


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 353 NSLGPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECR-- 180
           NSL  RS + + +S    R  D RHE          ++    + + Y KK   + +    
Sbjct: 215 NSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNV 274

Query: 179 QEN*LRTRSAMKTDRFS*SHQKTVSSNK 96
           +E  LR R++ +  R+S S ++   S K
Sbjct: 275 EEKHLRERTSRR--RYSRSREREQKSYK 300


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 353 NSLGPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECR-- 180
           NSL  RS + + +S    R  D RHE          ++    + + Y KK   + +    
Sbjct: 215 NSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNV 274

Query: 179 QEN*LRTRSAMKTDRFS*SHQKTVSSNK 96
           +E  LR R++ +  R+S S ++   S K
Sbjct: 275 EEKHLRERTSRR--RYSRSREREQKSYK 300


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 353 NSLGPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECR-- 180
           NSL  RS + + +S    R  D RHE          ++    + + Y KK   + +    
Sbjct: 215 NSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNV 274

Query: 179 QEN*LRTRSAMKTDRFS*SHQKTVSSNK 96
           +E  LR R++ +  R+S S ++   S K
Sbjct: 275 EEKHLRERTSRR--RYSRSREREQKSYK 300


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 353 NSLGPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECR-- 180
           NSL  RS + + +S    R  D RHE          ++    + + Y KK   + +    
Sbjct: 215 NSLRSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNV 274

Query: 179 QEN*LRTRSAMKTDRFS*SHQKTVSSNK 96
           +E  LR R++ +  R+S S ++   S K
Sbjct: 275 EEKHLRERTSRR--RYSRSREREQKSYK 300


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = -1

Query: 353 NSLGPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECR-- 180
           NSL  RS + + +S    R  D RHE          ++    + + Y KK   + +    
Sbjct: 215 NSLRSRSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKKDRRYDQLHNV 274

Query: 179 QEN*LRTRSAMKTDRFS*SHQKTVSSNK 96
           +E  LR R++ +  R+S S ++   S K
Sbjct: 275 EEKHLRERTSRR--RYSRSREREQKSYK 300


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 497 EQQNVHNTELLGSQVNAGYRGNPRTL 420
           ++ NVHN  L+    +   RG PRT+
Sbjct: 29  QRGNVHNDPLVVETTSGLVRGFPRTV 54


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -1

Query: 497 EQQNVHNTELLGSQVNAGYRGNPRTL 420
           ++ NVHN  L+    +   RG PRT+
Sbjct: 29  QRGNVHNDPLVVETTSGLVRGFPRTV 54


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +3

Query: 372 MSPLHSHTRRPISV 413
           + P H H  RPIS+
Sbjct: 539 LGPKHDHQGRPISI 552


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = +2

Query: 413 PGSEYGGSRGTL 448
           PG E GGS G L
Sbjct: 621 PGEEMGGSSGVL 632


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,238
Number of Sequences: 438
Number of extensions: 3372
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)