Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00825
         (608 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23720.2 68418.m02781 dual specificity protein phosphatase fa...    29   3.2  
At5g23720.1 68418.m02780 dual specificity protein phosphatase fa...    29   3.2  
At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein...    28   5.6  
At1g29470.1 68414.m03605 dehydration-responsive protein-related ...    27   9.7  

>At5g23720.2 68418.m02781 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain; contains TG
           acceptor splice site at intron 9
          Length = 845

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 278 EKEKRKNGTRIKTSLSIQDQIYIKKASSFSE 186
           ++E+R +    ++ LSI DQ+ + +AS FS+
Sbjct: 278 QRERRASSVDSRSRLSISDQMLVSQASDFSD 308


>At5g23720.1 68418.m02780 dual specificity protein phosphatase
           family protein contains Pfam profile: PF00782 dual
           specificity phosphatase, catalytic domain; contains TG
           acceptor splice site at intron 9
          Length = 929

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 278 EKEKRKNGTRIKTSLSIQDQIYIKKASSFSE 186
           ++E+R +    ++ LSI DQ+ + +AS FS+
Sbjct: 362 QRERRASSVDSRSRLSISDQMLVSQASDFSD 392


>At1g65070.1 68414.m07377 DNA mismatch repair MutS family protein
           contains Pfam profile PF00488: MutS domain V
          Length = 857

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/51 (39%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
 Frame = -3

Query: 180 TRELTSNAQCNENRPFFVIPSKNCII*QAHVNQQVFNYYWTS--KNDSEHI 34
           T   TSN      R FFV+P  NC        Q V N   TS   N  EHI
Sbjct: 765 TSSQTSNRSLRSKRQFFVVPD-NCTDKHERARQCVANAKRTSADSNVKEHI 814


>At1g29470.1 68414.m03605 dehydration-responsive protein-related
           similar to early-responsive to dehydration stress ERD3
           protein [Arabidopsis thaliana] GI:15320410; contains
           Pfam profile PF03141: Putative methyltransferase
          Length = 770

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = -1

Query: 344 GPRSNTCRSSSPGPHRRFDPRHEKEKRKNGTRIKTSLSIQDQIYIKKASSFSECRQEN 171
           G  ++  ++ S    + FD ++    RKNG   K + S  D+   K+ +   E  +EN
Sbjct: 103 GEENSGEKTESAEERKEFDDKNGDGDRKNGDGEKDTESESDETKQKEKTQLEESSEEN 160


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,740,807
Number of Sequences: 28952
Number of extensions: 264845
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)