Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00823
         (785 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.0  
SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31 |...    26   7.0  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   9.3  
SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   9.3  

>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 15/67 (22%), Positives = 31/67 (46%)
 Frame = -3

Query: 645 RLPKFKIIAITYVILKFVVNFQTIMSDFEQ*TKQFFTNTMYIRIVNQHVELFFSHATSNG 466
           R+P    +++ Y +++  +N +  +S  E         T+    +N+ V +  +H T+NG
Sbjct: 475 RIPNLCAVSLYYHLIRICLN-RPFLSRKEVTANDLTPKTICTDSINEIVTVIRAHRTANG 533

Query: 465 YTKRNLY 445
                LY
Sbjct: 534 LRYSTLY 540


>SPBC725.06c |ppk31|mug25|serine/threonine protein kinase Ppk31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1032

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -1

Query: 557 NEQNNFLQTLCIYVLSINMWN 495
           NE  NFLQT  + +LSI M N
Sbjct: 359 NEVKNFLQTYSLNMLSIEMEN 379


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 547  TIFYKHYVYTYCQSTCGIIFLARNVKWLYKTKSVRNVRP 431
            T+F    +  Y + T    F A    WL   + ++++RP
Sbjct: 1206 TLFIAIIISNYAERTGSAFFTAEQRAWLELRRKIKSMRP 1244


>SPBC16C6.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 350

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 688 GNKSLFYLRTKDQRSFAKIQNNCYYIRHSEICCQFSN 578
           G + L Y    DQRSF+K  N    +++ +  C  S+
Sbjct: 101 GTRQLSYNENLDQRSFSKTPNKHIEVKNLKDLCSPSH 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,149,710
Number of Sequences: 5004
Number of extensions: 66285
Number of successful extensions: 157
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)