Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00823
         (785 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0478 + 17621678-17623768                                         28   7.3  
02_02_0498 - 10973243-10973345,10973850-10973882,10974104-109741...    28   9.7  

>08_02_0478 + 17621678-17623768
          Length = 696

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = -2

Query: 316 VQLISAVNSHVFLFEGREHHTY 251
           V+L S V SH+F+ E R+H TY
Sbjct: 586 VELASDVASHLFVAEPRQHSTY 607


>02_02_0498 -
           10973243-10973345,10973850-10973882,10974104-10974166,
           10975934-10976004,10976703-10976789,10976870-10976983,
           10977395-10977508,10977784-10977844,10978608-10978923,
           10979031-10979721,10979948-10980073,10980180-10980247,
           10980314-10980449,10981109-10981238,10981266-10981382,
           10981614-10981763,10982158-10982266,10982584-10982701,
           10984143-10984168,10984219-10984256,10986267-10986373
          Length = 925

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 17/62 (27%), Positives = 29/62 (46%)
 Frame = -1

Query: 215 SMSSGNHLTTYIIGHELHSPICTIEIKSLAINFDT*CYTIRSPESVDPXFSRLFLLHCVL 36
           S+  G+ LTT ++        CT++++    +    C T+      +P   RL + H VL
Sbjct: 656 SLGVGSELTTSLLAAGAAELPCTVKLRIWRHDIKDPCVTL------EPEACRLTISHAVL 709

Query: 35  CR 30
           CR
Sbjct: 710 CR 711


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,195,610
Number of Sequences: 37544
Number of extensions: 350564
Number of successful extensions: 767
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)