Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00823
         (785 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)                   29   3.2  
SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)                  29   4.3  
SB_58313| Best HMM Match : UPF0180 (HMM E-Value=3.4)                   29   5.6  
SB_54439| Best HMM Match : SNF (HMM E-Value=0)                         29   5.6  
SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)                     29   5.6  
SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_39963| Best HMM Match : EGF (HMM E-Value=1.4e-13)
          Length = 3035

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 18/82 (21%), Positives = 36/82 (43%)
 Frame = -2

Query: 640  AKIQNNCYYIRHSEICCQFSNDNERFRTMNKTIFYKHYVYTYCQSTCGIIFLARNVKWLY 461
            A+ QN   +   SE C +F +D +    ++       YVYT C+ +    F+ +  + +Y
Sbjct: 866  AETQNTFVFSNCSEKCPRFLHDTKCHSALHCLRQTDTYVYTVCRDSDSAFFVHQAEEVIY 925

Query: 460  KTKSVRNVRPIVVAETISVYHN 395
            K      ++  +  +  S + N
Sbjct: 926  KDYKFLAIKAELPTDKTSKHEN 947


>SB_9222| Best HMM Match : 7tm_1 (HMM E-Value=4.1e-06)
          Length = 425

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -2

Query: 364 LLTKICW--LYSTPVIITVQLISA-VNSHVFLFEGREHHTYNRDWWCSGRD*C 215
           L+T  C+  L+S   I+ V L +A +   VF    R H T   + WC G + C
Sbjct: 54  LVTVACYRCLHSATYILLVSLATADLLVSVFSMPWRIHQTVRNNHWCLGMELC 106


>SB_58313| Best HMM Match : UPF0180 (HMM E-Value=3.4)
          Length = 478

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = +1

Query: 499 HMLIDNTYIHSVCKKLFCSLFEIAHYRLKIDN 594
           H+ +   Y+  +C  +FCS     H R ++DN
Sbjct: 142 HINVRELYVVYICLTIFCSAMINVHLRFELDN 173


>SB_54439| Best HMM Match : SNF (HMM E-Value=0)
          Length = 701

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 403 YHNRST*IKMDIGLLTKICWLYSTPVI-ITVQLISAVN 293
           Y N +  I   I    K+CW++ TP+  + V + S VN
Sbjct: 331 YQNMTDMIGFRINPYLKVCWIFCTPIFCLAVFIFSLVN 368


>SB_27966| Best HMM Match : RCSD (HMM E-Value=0.11)
          Length = 652

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = -3

Query: 285 CSCSKAE--SIIHTIETGGVQVVIDVYELR*PFNNIYYR 175
           C C +A   +IIHT+ T G+   +    +R  FNN  YR
Sbjct: 151 CKCERAHGGNIIHTMITHGIPAFMCNQRVRSLFNNANYR 189


>SB_51542| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 174

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 1/79 (1%)
 Frame = +3

Query: 198 VTGAHRHQSRPEHHQSRLYV*CSRPSNRNT*LFTAEISWTVIITGV-LYNQQILVSKPIS 374
           +T  H H  R  +H  +     S P N  T   T   + T+IIT +      I ++  I+
Sbjct: 69  ITSQHNHHYRHHNHHHQSTQSSSPPVNTITTTITITTTITIIITTINTITTTITITTTIT 128

Query: 375 IFIYVERL**TLIVSATTM 431
           I I       T I   TT+
Sbjct: 129 IIITTVNTITTTITITTTI 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,639,035
Number of Sequences: 59808
Number of extensions: 459372
Number of successful extensions: 919
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)