Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00823
         (785 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical ...    29   3.8  
Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical pr...    28   8.7  
U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical p...    28   8.7  

>AF098996-4|AAC68705.1|  888|Caenorhabditis elegans Hypothetical
           protein T11F1.8 protein.
          Length = 888

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/52 (30%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +1

Query: 502 MLIDNTYIHSVCKKLFCSLFEIAH-YRLKIDNKFQNDVCNSNYFEFWQTTVD 654
           ML DN  + +  +K  C +++I + Y ++I+N+  ++ C  N+FE    T+D
Sbjct: 437 MLYDNPGLFANNEK--CLMYQITYDYFIRINNQDCDNKCIFNHFELTSETID 486


>Z81476-4|CAB03923.1|  707|Caenorhabditis elegans Hypothetical
           protein C25F9.5 protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
 Frame = -2

Query: 595 CCQFSNDN-ERFRTMNKTIFYKHY 527
           CCQFSND  E   +  K  FYK++
Sbjct: 430 CCQFSNDMWESIVSYTKEFFYKNF 453


>U40417-13|AAA81420.1| 1330|Caenorhabditis elegans Hypothetical
           protein T08A9.1 protein.
          Length = 1330

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -2

Query: 652 QRSFAKIQNNCYYIRHSEICCQFSNDNERFRTMNKTIFYKHYVY 521
           +R   K +   ++  HS  C QFS D E+ R        KH+++
Sbjct: 420 RRRLLKTELEEWHTDHSTKCAQFSTDEEKSREQLGRKLKKHFLH 463


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,325,978
Number of Sequences: 27780
Number of extensions: 372992
Number of successful extensions: 999
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)