Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00823
         (785 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g52460.1 68418.m06509 F-box family protein contains F-box dom...    29   2.6  
At1g60060.1 68414.m06766 expressed protein                             29   3.5  
At3g21690.1 68416.m02734 MATE efflux family protein similar to r...    28   6.1  

>At5g52460.1 68418.m06509 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 369

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
 Frame = -2

Query: 676 LFYLRTKDQRSFAKIQNNCYYIRHSEICCQFSNDNE-RFRTMNKTIFYKHYVYTYCQS 506
           LFY+  KD+ S  ++ ++C  +  S++    S++ + RF  ++K    K ++   C +
Sbjct: 138 LFYVVFKDENSLERLISSCSVLARSKVGLAISDNRDYRFAKVHKLRLEKPHIDVVCHT 195


>At1g60060.1 68414.m06766 expressed protein
          Length = 386

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 11/44 (25%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
 Frame = -2

Query: 583 SNDNERFRTMNKTIFYK--HYVYTYCQSTCGIIFLARNVKWLYK 458
           ++D ++++ +   +F+K  H +Y Y +   G +    + KW+YK
Sbjct: 98  NSDFQQYQGLQPELFFKMSHEIYNYGEGLIGKVAADHSHKWIYK 141


>At3g21690.1 68416.m02734 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           MatE uncharacterized membrane protein family
          Length = 506

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -2

Query: 418 ETISVYHNRST*IKMDIGLLTKICWLYSTPVIITVQLISAVNSHVFLF 275
           E + VY  RST +    GLL  + +++S P+++ +    A+ S   LF
Sbjct: 128 EMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLFLGESPAIASAASLF 175


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,632,414
Number of Sequences: 28952
Number of extensions: 314197
Number of successful extensions: 747
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 730
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)