Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00822
(699 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 262 4e-71
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 261 6e-71
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 261 6e-71
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 164 9e-42
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 150 2e-37
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 86 4e-18
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 40 3e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 40 3e-04
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 39 6e-04
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 38 0.001
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 33 0.030
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 32 0.069
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 31 0.16
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.85
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb... 29 0.85
SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|ch... 28 1.1
SPBC1271.15c |||translation initiation factor IF-2Mt|Schizosacch... 27 2.6
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 27 3.4
SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|c... 26 6.0
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 262 bits (641), Expect = 4e-71
Identities = 132/170 (77%), Positives = 144/170 (84%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 181
EK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 182 KAEREWYHNRYCSL-EVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 358
KAERE +L + + +IDAPGHRDFIKNMITGTSQADCAVLI+ GTGEF
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEF 123
Query: 359 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 508
EAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 93.9 bits (223), Expect = 2e-20
Identities = 37/63 (58%), Positives = 50/63 (79%)
Frame = +1
Query: 511 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 690
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDS 232
Query: 691 ILP 699
I P
Sbjct: 233 IEP 235
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 261 bits (640), Expect = 6e-71
Identities = 131/170 (77%), Positives = 144/170 (84%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 181
EK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 182 KAEREWYHNRYCSL-EVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 358
KAERE +L + + +IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEF
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEF 123
Query: 359 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 508
EAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 93.9 bits (223), Expect = 2e-20
Identities = 37/63 (58%), Positives = 50/63 (79%)
Frame = +1
Query: 511 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 690
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDS 232
Query: 691 ILP 699
I P
Sbjct: 233 IEP 235
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 261 bits (640), Expect = 6e-71
Identities = 131/170 (77%), Positives = 144/170 (84%), Gaps = 1/170 (0%)
Frame = +2
Query: 2 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 181
EK HIN+VVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKL
Sbjct: 4 EKGHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKL 63
Query: 182 KAEREWYHNRYCSL-EVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 358
KAERE +L + + +IDAPGHRDFIKNMITGTSQADCA+LI+ GTGEF
Sbjct: 64 KAERERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEF 123
Query: 359 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKE 508
EAGISK+GQTREHALLA+TLGVKQLIV VNKMD+T +S+ RFEEI KE
Sbjct: 124 EAGISKDGQTREHALLAYTLGVKQLIVAVNKMDTT--GWSQARFEEIVKE 171
Score = 93.9 bits (223), Expect = 2e-20
Identities = 37/63 (58%), Positives = 50/63 (79%)
Frame = +1
Query: 511 SSYIKKIGYNPAAVAFVPISGWHGDNMLEPSTKMPWFKGWQVERKEGKADGKCLIEALDA 690
S++IKK+G+NP V FVP+SG+ GDNM+EP+T MPW++GWQ E K G GK L+EA+D+
Sbjct: 173 SNFIKKVGFNPKTVPFVPVSGFQGDNMIEPTTNMPWYQGWQKETKAGVVKGKTLLEAIDS 232
Query: 691 ILP 699
I P
Sbjct: 233 IEP 235
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 164 bits (399), Expect = 9e-42
Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 5/182 (2%)
Frame = +2
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 184
K H+NIV IGHVD+GKST G++++ G +DKRT+EK E+EA+E GK S+ +W LD
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTS 295
Query: 185 AEREW-----YHNRYCSLEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 349
ERE Y E R L+DAPGH+ ++ NMI G SQAD VL+++A
Sbjct: 296 EEREKGKTVEVGRAYFETEHRRFS----LLDAPGHKGYVTNMINGASQADIGVLVISARR 351
Query: 350 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIKKEYPHTSRR 529
GEFEAG + GQTREHA+LA T G+ L+V +NKMD +SE R++E + RR
Sbjct: 352 GEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRR 411
Query: 530 LA 535
+A
Sbjct: 412 VA 413
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 150 bits (364), Expect = 2e-37
Identities = 77/167 (46%), Positives = 104/167 (62%), Gaps = 1/167 (0%)
Frame = +2
Query: 5 KTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 184
K +++VV GHVDSGKST G ++++ G I+ R+++K EA GKGSF YAW+LD +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTE 234
Query: 185 AER-EWYHNRYCSLEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFE 361
ER S + + + + DAPGHRDFI MI G S AD AVL+V + FE
Sbjct: 235 EERARGVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFE 294
Query: 362 AGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIK 502
G +NGQTREHA L LG+ +++V VNK+D +SE RF+EIK
Sbjct: 295 RGFLENGQTREHAYLLRALGISEIVVSVNKLDLMS--WSEDRFQEIK 339
Score = 31.5 bits (68), Expect = 0.12
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Frame = +1
Query: 520 IKKIGYNPAAVAFVPISGWHGDNML--EPSTKMPWFKG 627
IK +G+ + V FVPIS G N++ + S W+KG
Sbjct: 347 IKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKG 384
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 86.2 bits (204), Expect = 4e-18
Identities = 60/163 (36%), Positives = 83/163 (50%), Gaps = 3/163 (1%)
Frame = +2
Query: 2 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 181
+K H+NI IGHVD GK+T T I KC ++G+ SF +DK
Sbjct: 50 KKPHVNIGTIGHVDHGKTTLTA-AITKC--------------LSDLGQASFMDYSQIDKA 94
Query: 182 KAERE---WYHNRYCSLEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
E+ + + E N +D PGH D+IKNMITG + D A+++V+A G
Sbjct: 95 PEEKARGITISSAHVEYETANRHYAH--VDCPGHADYIKNMITGAATMDGAIIVVSATDG 152
Query: 353 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSE 481
+ QTREH LLA +GVKQ++V +NK+D EP E
Sbjct: 153 QMP-------QTREHLLLARQVGVKQIVVYINKVDMVEPDMIE 188
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 39.9 bits (89), Expect = 3e-04
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Frame = +2
Query: 17 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKA 187
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 188 EREWYHNRYCSLEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIV 337
E + L LID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 39.9 bits (89), Expect = 3e-04
Identities = 35/110 (31%), Positives = 48/110 (43%), Gaps = 3/110 (2%)
Frame = +2
Query: 17 NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKF-EKEAQEMGKGSFKYAWVLDKLKA 187
N+ VI HVD GKST T L+ K G I K +F + A E +G + + L A
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVQKAGIISAAKAGDARFMDTRADEQERGVTIKSTAI-SLFA 79
Query: 188 EREWYHNRYCSLEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIV 337
E + L LID+PGH DF + D A+++V
Sbjct: 80 EMTDDDMKDMKEPADGTDFLVNLIDSPGHVDFSSEVTAALRVTDGALVVV 129
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 39.1 bits (87), Expect = 6e-04
Identities = 45/150 (30%), Positives = 68/150 (45%), Gaps = 3/150 (2%)
Frame = +2
Query: 17 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 196
N+ +I H+D+GK+T T ++Y G F + G V+D L AER+
Sbjct: 30 NVGIIAHIDAGKTTLTEKMLYYGG---------FTSHFGNVDTGDT----VMDYLPAERQ 76
Query: 197 ---WYHNRYCSLEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 367
++ S RN ++ LID PGH DF + + D AV I+ + AG
Sbjct: 77 RGITINSAAISFTWRNQRI--NLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAG 129
Query: 368 ISKNGQTREHALLAFTLGVKQLIVGVNKMD 457
+ QT+ A G+ ++I VNKMD
Sbjct: 130 V--EAQTKVVWKQATKRGIPKVIF-VNKMD 156
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 38.3 bits (85), Expect = 0.001
Identities = 22/83 (26%), Positives = 37/83 (44%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
+D PGH + M+ G + D A+L++A QT EH + +K +I
Sbjct: 113 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQLKHII 166
Query: 437 VGVNKMDSTEPPYSEPRFEEIKK 505
+ NK+D +E ++ I K
Sbjct: 167 ILQNKVDLIRESAAEEHYQSILK 189
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 33.5 bits (73), Expect = 0.030
Identities = 30/114 (26%), Positives = 47/114 (41%), Gaps = 2/114 (1%)
Frame = +2
Query: 17 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK--FEKEAQEMGKGSFKYAWVLDKLKAE 190
N VI H+D GKST + ++ G I++ +K E +G A +
Sbjct: 60 NWAVIAHIDHGKSTLSDCILKLTGVINEHNFRNQFLDKLEVERRRGITVKAQTCSMI--- 116
Query: 191 REWYHNRYCSLEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
+YH + L LID PGH DF ++ + + +L+V A G
Sbjct: 117 -YYYHGQ---------SYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 32.3 bits (70), Expect = 0.069
Identities = 33/136 (24%), Positives = 55/136 (40%), Gaps = 9/136 (6%)
Frame = +2
Query: 17 NIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIEKFEKEAQEMGKGSF-KYAWVLDKLKAE 190
NI + H+DSGK+T T ++Y G I D + + +M + + + A
Sbjct: 61 NIGISAHIDSGKTTFTERVLYYTGRIKDIHEVRGKDNVGAKMDFMELEREKGITIQSAAT 120
Query: 191 REWYHNRYCSLEVRN*QVLCY-------LIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 349
+ +E Q + +ID PGH DF + D AVL++ A +
Sbjct: 121 HCTWERTVDQIEANEKQKTDFEKSYNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVS 180
Query: 350 GEFEAGISKNGQTREH 397
G I+ + Q R +
Sbjct: 181 GVQSQTITVDRQMRRY 196
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 31.1 bits (67), Expect = 0.16
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Frame = +2
Query: 17 NIVVIGHVDSGKSTTTGHLIYKCGGIDKR---TIEKFEKEAQEMGKGSFKYAWVLDKLKA 187
N ++ HVD GK+T L+ G I + T+ + E+ +G + K A
Sbjct: 21 NFTLLAHVDHGKTTLADSLLASNGIISSKLAGTVRFLDFREDEITRG------ITMKSSA 74
Query: 188 EREWYHNRYCSLEVR-N*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
++ + E R L LID+PGH DF + + + D A ++V A G
Sbjct: 75 ISLFFKVISQNDEKRVEKDYLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEG 130
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 28.7 bits (61), Expect = 0.85
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIV 337
+ID PGH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 662
Score = 28.7 bits (61), Expect = 0.85
Identities = 19/62 (30%), Positives = 25/62 (40%)
Frame = -2
Query: 236 SFELPESNIDCDTTHAQPLVCPIPKHI*RILYPFPGPPSRTSRWYVCQYHHICRSSDQWW 57
S L N D + + V +PK I I++ F P S S C+Y S D W
Sbjct: 12 SSNLRRMNRDHSSNNTNRTVLNLPKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSW 71
Query: 56 WT 51
T
Sbjct: 72 RT 73
>SPAC323.04 |||mitochondrial ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 487
Score = 28.3 bits (60), Expect = 1.1
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = +3
Query: 447 TKWIPLNHHTVSPDLRKSRRNILI-HQEDWLQPSCCRFRAH 566
TK++ + H+ ++ L S+ ++I H ED L P+C RAH
Sbjct: 438 TKYVHMAHNYLNEKLSPSQAMVIISHYEDEL-PACVNRRAH 477
>SPBC1271.15c |||translation initiation factor
IF-2Mt|Schizosaccharomyces pombe|chr 2|||Manual
Length = 686
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
+D PGH F G + AD VL+VA G
Sbjct: 225 LDTPGHMAFEAMRKRGANIADIVVLVVAGDDG 256
>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 983
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIV 337
ID PGH DF+ + + +D VL+V
Sbjct: 214 IDTPGHVDFVDEVAAPMAISDGVVLVV 240
>SPAC607.08c |||DUF726 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 579
Score = 25.8 bits (54), Expect = 6.0
Identities = 16/61 (26%), Positives = 30/61 (49%)
Frame = +2
Query: 26 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREWYH 205
++ V+S +ST G +D T+E + ++ +G +Y W++ K+ ER Y
Sbjct: 460 LVYRVNSAQSTAAG---LGPVSLDSNTLENVD--VGDLVEGHLQYRWLVAKILKERLGYD 514
Query: 206 N 208
N
Sbjct: 515 N 515
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,954,853
Number of Sequences: 5004
Number of extensions: 64158
Number of successful extensions: 245
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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