Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00822
(699 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 132 3e-31
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 101 7e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 94 9e-20
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 76 2e-14
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 38 0.006
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.042
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.096
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 32 0.39
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.90
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 31 0.90
SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024) 29 3.6
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 29 3.6
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.4
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 28 8.4
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 132 bits (319), Expect = 3e-31
Identities = 64/143 (44%), Positives = 93/143 (65%), Gaps = 1/143 (0%)
Frame = +2
Query: 77 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREWYHNRYCSLEVRN*QVLCY- 253
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER+ + + +
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
L+DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 434 IVGVNKMDSTEPPYSEPRFEEIK 502
++ VNKMD ++E R+EEIK
Sbjct: 286 VILVNKMDDPTVKWNEERYEEIK 308
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 101 bits (241), Expect = 7e-22
Identities = 46/68 (67%), Positives = 55/68 (80%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 433
L+DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQTREHA+L +LGV QL
Sbjct: 17 LMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQTREHAILVRSLGVTQL 76
Query: 434 IVGVNKMD 457
IV +NK+D
Sbjct: 77 IVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 94.3 bits (224), Expect = 9e-20
Identities = 49/71 (69%), Positives = 52/71 (73%)
Frame = +2
Query: 2 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 181
EK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+ S + KL
Sbjct: 4 EKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEVLCFS-SCLLFMSKL 62
Query: 182 KAEREWYHNRY 214
K E H Y
Sbjct: 63 KFELPCTHKIY 73
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 76.2 bits (179), Expect = 2e-14
Identities = 41/62 (66%), Positives = 45/62 (72%), Gaps = 3/62 (4%)
Frame = +2
Query: 137 MGKGSFKYAWVLDKLKAEREWYHNRYCSLEVRN*QVLCY---LIDAPGHRDFIKNMITGT 307
MGKGSFKYAWVLDKLKAERE + + + L Y +IDAPGHRDFIKNMITGT
Sbjct: 1 MGKGSFKYAWVLDKLKAERE--RGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGT 58
Query: 308 SQ 313
SQ
Sbjct: 59 SQ 60
Score = 44.0 bits (99), Expect = 1e-04
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 6/44 (13%)
Frame = +1
Query: 586 NMLEPSTKMPWFKGWQVER------KEGKADGKCLIEALDAILP 699
NM+ +++MPWFK W +ER KE A G L E LD+ILP
Sbjct: 53 NMITGTSQMPWFKQWTIERVDPATKKEANASGVTLFEGLDSILP 96
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 38.3 bits (85), Expect = 0.006
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
+D PGH + M+ G + D A+L++A QT EH + +K ++
Sbjct: 69 VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122
Query: 437 VGVNKMDSTEPPYSEPRFEEIKK 505
+ NK+D + ++ ++++I K
Sbjct: 123 ILQNKIDLVKESQAKDQYDQILK 145
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 35.5 bits (78), Expect = 0.042
Identities = 33/116 (28%), Positives = 47/116 (40%), Gaps = 4/116 (3%)
Frame = +2
Query: 17 NIVVIGHVDSGKSTTTGHLIYKCGGI--DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 190
N+ VI HVD GKST T L+ K G I K +F ++ L E
Sbjct: 20 NMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTAISLYYE 79
Query: 191 REWYHNRYCS--LEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
Y + + + L LID+PGH DF + D A+++V +G
Sbjct: 80 LPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 34.3 bits (75), Expect = 0.096
Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 7/122 (5%)
Frame = +2
Query: 8 THINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQEMGKGSFKYAWVLD 175
T I + V+G+V+SGKST G L Y G + + F E Q S + +
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQSGRTSSISHEILGF 170
Query: 176 KLKAEREWYHNRYCSLEV-RN*QVLCYLIDAPGHRDFIKNMITGTS--QADCAVLIVAAG 346
E Y + + +V L ID GH ++K I G + D A+L++A
Sbjct: 171 SCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTGHSPDYAMLVIAGN 230
Query: 347 TG 352
G
Sbjct: 231 AG 232
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 32.3 bits (70), Expect = 0.39
Identities = 26/110 (23%), Positives = 48/110 (43%), Gaps = 1/110 (0%)
Frame = +2
Query: 26 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAEREWYH 205
+I H D+GK+T T L+ G I +EA + K D ++ ER+
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 206 NRYCSLEVRN*Q-VLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 352
+ S+ N + ++D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 31.1 bits (67), Expect = 0.90
Identities = 23/67 (34%), Positives = 32/67 (47%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
ID PGH F G + D VL+VAA G ++ ++ HA+ A LI
Sbjct: 81 IDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV----PLI 132
Query: 437 VGVNKMD 457
V +NK+D
Sbjct: 133 VAINKID 139
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 31.1 bits (67), Expect = 0.90
Identities = 38/129 (29%), Positives = 55/129 (42%), Gaps = 2/129 (1%)
Frame = +2
Query: 11 HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 184
+ NI V+GHVDSGK++ L DK + ++G SF+ A L +
Sbjct: 35 NFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA--LPE-- 90
Query: 185 AEREWYHNRYCSLEVRN*QVLCYLIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEA 364
H R E Q+ L+D PGH IK +I G A +I GT E
Sbjct: 91 ------HLRSAGSEHDLLQMT--LVDCPGHASLIKTIIGG------AQIIGECGT--IEG 134
Query: 365 GISKNGQTR 391
G ++G+ +
Sbjct: 135 GFGQSGKVK 143
>SB_19418| Best HMM Match : Mucin (HMM E-Value=0.024)
Length = 1213
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 6/62 (9%)
Frame = -1
Query: 501 LISSNLGSLYGGSVESILFTPTMSCLTPRVKASKAC------SRV*PFLEIPASNSPVPA 340
L+S N L ++E IL TPT + + K C + P + NSP+P+
Sbjct: 806 LLSCNFNDLKIDNMEVILLTPTSMAASMATSSKKVCPSSAPTTTTNPTPSVTNGNSPIPS 865
Query: 339 AT 334
T
Sbjct: 866 GT 867
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 254 LIDAPGHRDFIKNMITGTSQADCAVLIV 337
+ID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 28.7 bits (61), Expect = 4.8
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +2
Query: 17 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 115
N ++ HVD GKST L+ G I K + K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975
>SB_13701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 6.3
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = +1
Query: 574 WHGDNMLEPSTKMPWFKGWQVERKE 648
+H DN + PWF+ W +++E
Sbjct: 191 YHNDNKTHSTQTGPWFRAWSNQKRE 215
>SB_43213| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 919
Score = 27.9 bits (59), Expect = 8.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 630 PSLEPRHFG*RLQHVVSVPSRNGHESDSSWVVANLLD 520
P+LEP + G L + S S GH+ D+ ++ LL+
Sbjct: 378 PNLEPSYIGKMLATIESTLSAKGHQEDAEEFLSCLLN 414
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 27.9 bits (59), Expect = 8.4
Identities = 20/67 (29%), Positives = 28/67 (41%)
Frame = +2
Query: 257 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 436
+D PGH F G D +++VAA QT+E A GV +I
Sbjct: 143 LDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTKEAISHAQAAGV-PII 194
Query: 437 VGVNKMD 457
+NK+D
Sbjct: 195 FAINKID 201
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,244,604
Number of Sequences: 59808
Number of extensions: 491499
Number of successful extensions: 1367
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1357
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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