Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00821
         (624 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   1.6  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    21   6.3  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    21   6.3  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 335 TSTLRSSTMLSQELEPTKKPSSRSCARFPTMVSVP 439
           ++T+ +S+     + PT   +S SC   P+M   P
Sbjct: 10  STTMATSSNAMSPMTPTYSMNSMSCVSMPSMNCSP 44


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 553 SSRLAMHNDTHNLLKVPTCRLLSPIPGSCRTVVRKMRIWYG 431
           SS +  H  TH+  +   CRL         T+ + +RI  G
Sbjct: 62  SSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSG 102


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -3

Query: 553 SSRLAMHNDTHNLLKVPTCRLLSPIPGSCRTVVRKMRIWYG 431
           SS +  H  TH+  +   CRL         T+ + +RI  G
Sbjct: 318 SSSVTTHMRTHSGERPYRCRLCKKAFSDSSTLTKHLRIHSG 358


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,197
Number of Sequences: 336
Number of extensions: 2692
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)