Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00820
         (690 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    28   1.1  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   1.9  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.5  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    26   5.9  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   5.9  
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    26   5.9  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    25   7.8  
SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces pom...    25   7.8  

>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
 Frame = -2

Query: 272 LFELFAGLNFISVVLKVE-EVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 96
           + +LFA +   SV L  +  + + +  P +      +T LAA    R    V  N +KFS
Sbjct: 216 ILKLFANIVANSVALTHDYSLQQSHEDPIIEPDNKFLTELAAYFYFRQQGWVVKNGTKFS 275

Query: 95  EEVILY 78
            + +LY
Sbjct: 276 VDFLLY 281


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 258 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 425
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 449 PVKGLYSEVGSRCRRFTNIP 508
           P+ GL+  VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 478 ESVPPIHEHPGHNYVYLASILYISP 552
           E V P  + PG   VY+ SILY SP
Sbjct: 885 EQVEPDVDLPGPEGVYVGSILYGSP 909


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = +2

Query: 545  LALSSFIVKLILVFTSVIVYRSNCKS-ELR*RN*NKFSDHGNNGRALV 685
            LALSS ++ LILVFTS        K+  +  ++    +D  N+G  L+
Sbjct: 1052 LALSSTLLNLILVFTSADFMSETSKTLNMALKSEFDMTDFNNSGSKLM 1099


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 491 RFTNIPGTIMFI*HLFYTLALSSFIVKLILVFTSVIVY 604
           R T + GTI+    +FY   L++FI  LI     V++Y
Sbjct: 480 RRTTLVGTILSFGVMFYVDRLNAFISFLIAGILVVVIY 517


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 430 APESTRSSKRTLLRGRESVPPIHEH 504
           AP++T SS   L + ++S+P  +EH
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEH 152


>SPBC1347.13c |||ribose methyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/44 (25%), Positives = 23/44 (52%)
 Frame = +2

Query: 446 GPVKGLYSEVGSRCRRFTNIPGTIMFI*HLFYTLALSSFIVKLI 577
           G  KGL + + ++C  + +IPG   ++  L  ++A    +  L+
Sbjct: 257 GSEKGLRTNILTQCSHYVSIPGGDKYVDSLNVSVAAGILLYSLV 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,185
Number of Sequences: 5004
Number of extensions: 51518
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 319939482
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)