Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00820
         (690 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0007 + 6056281-6057024,6057273-6057539,6057622-6057765,605...    29   3.5  
11_03_0084 + 9696368-9696554,9696648-9696718,9696821-9696901,969...    29   4.6  
02_01_0436 - 3166764-3166949,3167115-3167258,3167343-3167469,316...    29   4.6  
01_06_0061 - 26071984-26072343,26072792-26073139,26073228-260733...    28   6.1  
03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    28   8.0  

>02_02_0007 +
           6056281-6057024,6057273-6057539,6057622-6057765,
           6057844-6058191,6058713-6059102
          Length = 630

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 24/95 (25%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -2

Query: 371 VSDFKTVGGLLN---LLQGVAFECAYGFHLSTVSAVLFELFAGLNFISVVLKVEEVTKLY 201
           + DF T  G+     +L G      +G+ ++        L  G+ F S++L  E +T L 
Sbjct: 396 MGDFSTATGIATFTMMLLGRVILRKFGWGVAATITPAVLLLTGVGFFSLILFGEPLTPLM 455

Query: 200 SSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 96
           +       T+G+T L A   +     +F  S+K+S
Sbjct: 456 A-------TLGMTPLLAAVYVGAMQNIFSKSAKYS 483


>11_03_0084 +
           9696368-9696554,9696648-9696718,9696821-9696901,
           9697139-9697206,9697335-9697437,9700422-9700567,
           9700686-9700803,9701693-9701797,9702333-9702434,
           9702518-9702655,9703475-9703603,9703682-9703762,
           9703883-9703957,9704861-9705028,9705125-9705242,
           9705345-9705409,9705547-9705637,9705801-9705885,
           9706006-9706084,9706317-9706414,9707029-9707137,
           9707224-9707292,9707770-9707835,9707952-9708041,
           9708416-9708526
          Length = 850

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/41 (39%), Positives = 23/41 (56%)
 Frame = +3

Query: 384 GPEEMKAVMTAKDVTCTRVYKVQ*KDSTPRSGVGAADSRTS 506
           G + ++  M AKD T  +V +V  KD    S VG ADS+ +
Sbjct: 159 GMDVVEMAMWAKDNTTVKVTQVSTKDGPIESLVGEADSQVA 199


>02_01_0436 -
           3166764-3166949,3167115-3167258,3167343-3167469,
           3167746-3167825,3167933-3168184,3168271-3168399,
           3169039-3169088,3169221-3169323,3169429-3169548,
           3169725-3169786,3169873-3169915,3169995-3170183,
           3170299-3170367,3170460-3170539,3170648-3170723
          Length = 569

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 446 LVDSGASHVLSCHHSFHLLRAEFPDVSDFKTVGGLLNL 333
           L+D+           +HL   +FPDV  FK V G  N+
Sbjct: 498 LIDNLGDEFAKVQREYHLPAGDFPDVEHFKEVLGGYNI 535


>01_06_0061 -
           26071984-26072343,26072792-26073139,26073228-26073371,
           26073454-26073723,26075019-26075825
          Length = 642

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 28/109 (25%), Positives = 50/109 (45%), Gaps = 10/109 (9%)
 Frame = -2

Query: 392 LRAEFPD-------VSDFKTVGGLLN---LLQGVAFECAYGFHLSTVSAVLFELFAGLNF 243
           L+A+FP        + DF T  G+     +L G      +G+ ++ +      L  G+ F
Sbjct: 404 LKAQFPSPNEYSSFMGDFSTATGIATFTMMLLGRIILRKFGWGVAAMITPTVLLLTGVGF 463

Query: 242 ISVVLKVEEVTKLYSSPSLRSSTVGVTALAALRVIRPTPMVFMNSSKFS 96
            S++L  + +T     P L  +T+G+T L A   +     +F  S+K+S
Sbjct: 464 FSLILFGQPLT-----PML--ATMGMTPLLAAVYVGALQNIFSKSAKYS 505


>03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,
            9652201-9652287,9652657-9653669,9653832-9654854,
            9654946-9654969
          Length = 1029

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 288  HRQRGPLRTLRRLELHLSGLEG*RGD*IVFVTILTELHGRGD 163
            H  RG  R +RR  +H  G+EG   +  +    L ELH + +
Sbjct: 896  HDDRGMQRNMRRCGMHHGGVEGDSFEPHLHPAQLAELHAKAE 937


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,110
Number of Sequences: 37544
Number of extensions: 366595
Number of successful extensions: 919
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 919
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)