Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00819
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|c...    29   0.49 
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    29   0.86 
SPBC4B4.01c |||fumble family pantothenate kinase |Schizosaccharo...    26   6.1  
SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual    26   6.1  
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa...    25   8.0  

>SPAC1F3.04c |||DUF367 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 29.5 bits (63), Expect = 0.49
 Identities = 17/60 (28%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
 Frame = +3

Query: 276 YFVGFQN-SEVMINRDNWGHSYCDVRGEILG------SSQD--EHQRKHLPKVFSSIKNE 428
           Y VG+ N + ++++   WGHS+ +V  E+L        +QD  E ++K+L ++ +S + +
Sbjct: 142 YIVGYPNEARLLMDNFKWGHSFFEVNEELLDIYAQCHDAQDIQEKEKKYLEEMEASYQEQ 201


>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 28.7 bits (61), Expect = 0.86
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -1

Query: 651 FPVLSQIKPQAPLLVVPFRQFL*VSALQPYSPRSPKSLVSRKLPAEPF 508
           FPVL QI+P  P L +  R F+  S+    SP++ +    R LP+  F
Sbjct: 441 FPVLPQIRPSTP-LNLKLRNFIISSSEDSTSPKAKE--FDRPLPSTEF 485


>SPBC4B4.01c |||fumble family pantothenate kinase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 403

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 685 LSILPVSGPGEISRVESN*AAGSTPGGALPSIPLSFSFATIL 560
           +SIL V+GP +  R+  +   G T  G L  +  + SF  +L
Sbjct: 214 VSILKVTGPSQFERIGGSSLGGGTLWGLLSLLTPANSFDEML 255


>SPBP8B7.09c |||karyopherin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 978

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 321 NWGHSYCDVRGEILGSSQDEHQRKHLPKVFSSIKNE 428
           NW   +  ++G I  SSQ E    +L KV  SI +E
Sbjct: 123 NWNDFFASLQGVIAASSQSEFSNFYL-KVLLSIGDE 157


>SPBC530.15c ||SPBC661.01|spermidine family transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 516

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 519 AEPFSNVGGSLDDIFTVRTRAV 454
           + P + V GS  D+F+ RTR +
Sbjct: 178 SSPITTVAGSFSDMFSARTRGL 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,878,310
Number of Sequences: 5004
Number of extensions: 59260
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)