Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00819
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1157 + 10954619-10954835,10956078-10957114                       29   2.7  
05_05_0322 + 24094831-24094992,24095147-24095216,24096184-240963...    29   3.6  
01_06_0665 - 31003333-31003680,31003773-31003854,31004068-310041...    29   3.6  

>07_01_1157 + 10954619-10954835,10956078-10957114
          Length = 417

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 573 LQPYSPRSPKSLVSRKLPAEPFSNVGGSLDDIFTVRTRAVSNRLRTSN 430
           + PYSP+ P++ + RK+       V GSL  + T  + A+ + + TS+
Sbjct: 140 ISPYSPQFPQNNLERKIQIRRMLQVQGSL-RVHTFSSAAIVHAVETSD 186


>05_05_0322 +
           24094831-24094992,24095147-24095216,24096184-24096307,
           24096403-24096502,24096598-24096825,24096916-24097041,
           24097092-24097376,24097490-24097648,24097751-24097929,
           24098078-24098210
          Length = 521

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = -3

Query: 118 LERRLTDDMSANVSVSPRMR 59
           LERR TD MS+ V V+P+MR
Sbjct: 283 LERRPTDYMSSQVEVNPKMR 302


>01_06_0665 -
           31003333-31003680,31003773-31003854,31004068-31004198,
           31004272-31004370,31004511-31004666,31004877-31004951,
           31005554-31005736,31005833-31005983,31006732-31007027
          Length = 506

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = +2

Query: 365 IVARRTSAKAFAKGVFINQERKL-----EVRRRLDTALVLTVNMSSSDPPTLLNGSAGSF 529
           +V    +A A    V +++ R+      E RRR   A++  V    S P  LL G A + 
Sbjct: 11  VVVCAAAAAAVGVAVVVSRRRRSKREAEEERRRRAAAVIEEVEQRFSTPTALLRGIADAM 70

Query: 530 RETKDFGLRGE 562
            E  + GLR +
Sbjct: 71  VEEMERGLRAD 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,709,501
Number of Sequences: 37544
Number of extensions: 421706
Number of successful extensions: 1017
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)