Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00819
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67270.1 68418.m08480 microtubule-associated EB1 family prote...    31   0.75 
At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    29   2.3  
At4g10890.1 68417.m01772 expressed protein                             29   4.0  
At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putati...    29   4.0  
At5g56220.1 68418.m07016 expressed protein                             28   7.0  
At4g00990.1 68417.m00133 transcription factor jumonji (jmjC) dom...    28   7.0  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   9.2  
At3g12955.1 68416.m01614 auxin-responsive protein-related simila...    27   9.2  
At2g36350.1 68415.m04461 protein kinase, putative similar to pro...    27   9.2  

>At5g67270.1 68418.m08480 microtubule-associated EB1 family protein
           similar to SP|Q9UPY8 Microtubule-associated protein
           RP/EB family member 3 (Protein EB3) {Homo sapiens};
           contains Pfam profiles PF00307: Calponin homology (CH)
           domain, PF03271: EB1 protein
          Length = 329

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 16/50 (32%), Positives = 29/50 (58%)
 Frame = -3

Query: 178 PTSTLTEEHRDRILILNRRFLERRLTDDMSANVSVSPRMRCTDSAAHKCN 29
           P +  +EE R+ +    +R L   L  D++A  ++SPR R +D++  KC+
Sbjct: 272 PIAEGSEERRNSVTESQKRKLIVNLDVDVAAITTLSPRQRLSDASDVKCS 321


>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 19/67 (28%), Positives = 31/67 (46%)
 Frame = -2

Query: 371 RRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIEPRSYSIFHARNIQAAFLARFEHSNLFK 192
           RRS + + N+    PP+ PI+H    L   KI+PR       + ++ + ++      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 191 VILSAHL 171
               AHL
Sbjct: 112 KAAEAHL 118


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 370 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSNRKYVI 486
           ++T I   +C RC+H S R K+R S   R   S++   ++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNSENAIL 233


>At1g19150.1 68414.m02384 chlorophyll A-B binding protein, putative
           / LHCI type II, putative very strong similarity to PSI
           type II chlorophyll a/b-binding protein Lhca2*1
           GI:541565 from [Arabidopsis thaliana]; contains Pfam
           profile: PF00504 chlorophyll A-B binding protein
          Length = 270

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 575 LCNHTPPGVQNLWFPGSCPPSHL 507
           +C   PP  + LWFPGS PP  L
Sbjct: 57  VCEPLPPD-RPLWFPGSSPPEWL 78


>At5g56220.1 68418.m07016 expressed protein
          Length = 973

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 621 APLLVVPFRQFL*VSALQ-PY-SPRSPKSLVSRKLPAEPFSNVGGSLDDI 478
           +P LV P      VSALQ PY SPR+    ++   P+ P S  G   DD+
Sbjct: 53  SPSLVSPPSSAF-VSALQSPYISPRATTPSITTHKPSPPLSYKGSQSDDV 101


>At4g00990.1 68417.m00133 transcription factor jumonji (jmjC)
           domain-containing protein contains Pfam domain, PF02373:
           jmjC domain
          Length = 840

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 586 KELTEGHHQEWSLRLNLTQHGKSHQARTPEG 678
           KEL+EG HQE   + N    GK ++ R P G
Sbjct: 238 KELSEGFHQERDGKKN--AEGKGYECRIPAG 266


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -2

Query: 407 HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPINHYLGVLKTNKIE 273
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At3g12955.1 68416.m01614 auxin-responsive protein-related similar
           to indole-3-acetic acid induced protein arg7 (SP:P32295)
           [Vigna radiata]
          Length = 139

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 141 ILSRCSSVSVEVGRQYYFEQIR 206
           +L RC SVS ++GR Y +  +R
Sbjct: 10  MLRRCKSVSTQLGRSYSYTSLR 31


>At2g36350.1 68415.m04461 protein kinase, putative similar to
           protein kinase KIPK (KCBP-interacting protein kinase)
           [Arabidopsis thaliana] gi|7716430|gb|AAF68383
          Length = 949

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 220 PALSTLICSK*YCRPTSTLTEEH 152
           P+ S L+C K +C   ST TE H
Sbjct: 391 PSASQLLCQKCHCAVKSTSTENH 413


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,398,557
Number of Sequences: 28952
Number of extensions: 325480
Number of successful extensions: 751
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)