Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00818
         (732 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy...    30   0.39 
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    25   8.4  

>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 800

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 12/47 (25%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 394 YIIYLSVWICLYCAMQSHLIQTVVSKNKIYAIKIKMKIVLVIT-TPS 531
           Y+I+ S ++C++    S L++T+    +++A     K++  +T TP+
Sbjct: 88  YVIFQSGYVCVHDWSNSELLRTMEISTRVHAASFSGKLLFAVTDTPA 134


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -3

Query: 187  KDSVLNATLKVQSRLTKLESIPN-NNEKKVICRNQNPYLLTQTM 59
            K SVL+AT+KV   +T      N  + KK +  NQ+P  + + +
Sbjct: 1106 KSSVLSATIKVFEPVTNYSKTRNMPSLKKFLTVNQDPLRIVKEL 1149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,598,426
Number of Sequences: 5004
Number of extensions: 49066
Number of successful extensions: 162
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)