Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00818
         (732 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0496 + 19704429-19704613,19705874-19706736,19706764-197069...    29   2.9  
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    28   6.6  
01_04_0008 + 15041682-15041909,15042035-15042319,15042406-150427...    28   6.6  

>12_02_0496 +
           19704429-19704613,19705874-19706736,19706764-19706951,
           19707190-19708200
          Length = 748

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 CCVQNAILRHQFDTKNEIKPFKILISNYCRV 256
           C VQ  +L+H+  +   I+PF  LI  +CR+
Sbjct: 397 CLVQPVLLKHKQRSTRVIRPFFPLIFRWCRI 427


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 553 KTQPNNFHEQKKKIERQNKNYEKYQRISQNEL 648
           KTQ    H QK+K +  +++Y K +++ Q EL
Sbjct: 716 KTQEKE-HRQKRKADHASRDYNKRRKVLQREL 746


>01_04_0008 +
           15041682-15041909,15042035-15042319,15042406-15042723,
           15044087-15044128,15045111-15045391,15045808-15045883,
           15046196-15046296,15047971-15048088,15048872-15049186
          Length = 587

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -1

Query: 558 CFLVQAIFDRWRCYNKNNLHFDFYGINFIFTDN 460
           C++ Q +     C+N N LH D  G N +  +N
Sbjct: 174 CYVQQLLSGLEHCHNNNVLHRDIKGSNLLLDNN 206


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,218,521
Number of Sequences: 37544
Number of extensions: 235609
Number of successful extensions: 460
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)