Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00818
         (732 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.9  
SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1)                   28   9.0  

>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6863

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = -3

Query: 184  DSVLNATLKVQSRLTKLESIPNNNEKKVICRNQNPYLLTQTMKHSV 47
            D + + +L+V   + K+E +P N +K+VI + +   LL Q  K  V
Sbjct: 5108 DGLEDKSLRVSQLVEKMEELPENKQKQVI-KEKLSQLLDQLKKQKV 5152


>SB_51831| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1065

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 11/42 (26%), Positives = 26/42 (61%)
 Frame = +1

Query: 520  TTPSIKNGLN*KTQPNNFHEQKKKIERQNKNYEKYQRISQNE 645
            TTPS  +G   K +P+  HE++++   ++ N +K+++  + +
Sbjct: 938  TTPSAVHGEEDKNKPHRKHEERERHHGRHGNSKKHRKHDEED 979


>SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1)
          Length = 332

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 15/53 (28%), Positives = 29/53 (54%)
 Frame = +1

Query: 487 IKIKMKIVLVITTPSIKNGLN*KTQPNNFHEQKKKIERQNKNYEKYQRISQNE 645
           IK K + V V+  P  K     + +P+   + K+K+ +Q K  EK+++I + +
Sbjct: 94  IKQKSENVSVLVKPDCKQDAVKEQKPSG-RKLKRKLYKQRKRQEKFKKIEKKK 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,019,836
Number of Sequences: 59808
Number of extensions: 323700
Number of successful extensions: 823
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 823
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)