Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00818
         (732 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g26350.1 68418.m03150 hypothetical protein                          29   3.2  
At2g33570.1 68415.m04114 expressed protein                             29   4.2  
At2g22560.1 68415.m02674 kinase interacting protein-related simi...    27   9.7  

>At5g26350.1 68418.m03150 hypothetical protein
          Length = 126

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 553 KTQPNNFHEQKKKIERQNKNYEKYQRISQNELKMI 657
           K + N   E+KKK+E++ K  E+ ++  + E K +
Sbjct: 54  KEEKNKLEEEKKKLEKEKKQLEEEKKQLEEEKKQL 88


>At2g33570.1 68415.m04114 expressed protein
          Length = 496

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = -3

Query: 166 TLKVQSRLTKLESIPNNNEKKVICRNQNPYLLTQTMKHSV 47
           T+ V   L + E +PN+ +KKV   N+ PY+    MK  V
Sbjct: 439 TITVHEELCR-EMLPNSAKKKVTLYNKLPYVYDDNMKKLV 477


>At2g22560.1 68415.m02674 kinase interacting protein-related similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]; weak similarity to Myosin II heavy chain,
           non muscle (Swiss-Prot:P08799) [Dictyostelium discoideum
          Length = 891

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -3

Query: 184 DSVLNATLKVQSRLTKLESIPNNNEKK 104
           DSVL++ L+ Q    K++S+P+N  +K
Sbjct: 516 DSVLDSVLEKQGESDKIDSVPSNVSEK 542


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,613,593
Number of Sequences: 28952
Number of extensions: 225107
Number of successful extensions: 553
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)