Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00817
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid phospho... 48 2e-06
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 27 4.1
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 5.4
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 26 5.4
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as... 26 5.4
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy... 26 7.1
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S... 25 9.4
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 25 9.4
SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces... 25 9.4
>SPBC32F12.01c ||SPBC685.10c|inositol phosphosphingolipid
phospholipase C |Schizosaccharomyces pombe|chr
2|||Manual
Length = 424
Score = 48.0 bits (109), Expect = 2e-06
Identities = 23/65 (35%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Frame = +1
Query: 514 RLINVYCTHLHAEYHED-DMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLS 690
R+I+++ THLHA Y + D YL HR+ QA+ ++ ++ + I AGD N P +
Sbjct: 129 RIISLFNTHLHAPYGKGADTYLCHRLSQAWYISKLLRAAVQRGHIVIAAGDFNIQPLSVP 188
Query: 691 YKIIS 705
++II+
Sbjct: 189 HEIIT 193
Score = 46.4 bits (105), Expect = 5e-06
Identities = 23/58 (39%), Positives = 36/58 (62%)
Frame = +3
Query: 252 GIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLPYSYYFYS 425
G+ VSK + ER +A+ L K +++IV LQEVWS D+ ++ + L YS +F+S
Sbjct: 18 GLRFVSKYRTERLKAVGEKLAKCDYDIVLLQEVWSIYDFQEIRNLVSCNLVYSRFFHS 75
Score = 30.7 bits (66), Expect = 0.25
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 422 QWPLNGYIHKIHHGDWFGGKGVGLCRIKF--GRDSSMSIAHI 541
++PLNG GDW+ GKGV ++ GR S+ H+
Sbjct: 97 KYPLNGRPQAFWRGDWYVGKGVATASLQHPSGRIISLFNTHL 138
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 199 SFDTDMEFTLNIFTLNCWGYQWCLRIRKKDMKLYLHTY 312
+FD D FTLNI + + L++ + LY H Y
Sbjct: 392 TFDDD-NFTLNIMNAYVYANESLLQLLQSSQSLYAHLY 428
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 5.4
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 207 YRYGIHTQYFHLELLGIPVVSKNKKERYEAISTYLLKSEHNIVCL 341
++Y + + + L +G ++ KK+ E I+ + H + CL
Sbjct: 338 HKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACL 382
>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/31 (38%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 329 YSMFARSL---E*KRLPIFKGEPKECTPIFL 412
+ +F SL E R+P + +P +CTP+FL
Sbjct: 59 HHLFVMSLITREYMRMPALRLKPSQCTPLFL 89
>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
associated subunit Sfc1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = +3
Query: 387 LKNVLPY-SYYFYSGP*MGTYTKY 455
LK LPY SY + SGP TYT++
Sbjct: 252 LKFALPYLSYLWTSGPFRDTYTRF 275
>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2052
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 597 CLKHTMS*IHVVFVVFCVKMCAIDIDESLPNLIRQRPTPF 478
C KH + V + F K C I + +S+ N PTP+
Sbjct: 1957 CNKHAATCTGSVGIFFITKACGILLLDSISNTGTIMPTPY 1996
>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1842
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/13 (61%), Positives = 12/13 (92%)
Frame = +3
Query: 351 WSEKDYLYLKENL 389
W+E++YLYL+E L
Sbjct: 1417 WAEREYLYLEEEL 1429
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 9.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -1
Query: 528 DIDESLPNLIRQRPTPFPPNQS 463
++D ++ N +R +P P PP S
Sbjct: 77 NVDATIENALRGQPLPLPPRNS 98
>SPCC613.01 ||SPCC757.14|membrane transporter|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 9.4
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = +3
Query: 444 YTKYIMVTGLEEKVWVSVGSSLG 512
+ KY M+TG+ +V +S+G ++G
Sbjct: 433 HPKYHMITGVVVQVGISIGETVG 455
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,418,911
Number of Sequences: 5004
Number of extensions: 75807
Number of successful extensions: 203
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 203
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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