Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00817
         (795 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257     30   2.4  
01_06_0418 + 29210310-29210612,29211154-29211541,29211946-292121...    30   2.4  
12_01_0013 - 99290-99299,99593-99703,100085-100587,100925-100995...    29   5.6  
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716...    28   7.4  

>11_04_0315 + 16306053-16306753,16306779-16308479,16308894-16309257
          Length = 921

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +1

Query: 526 VYCTHLHAE-YHEDDMY-LAHRVLQAYSTAEFVKLTSSPA 639
           V   H+  + +H  D+Y + H +LQA+S    +KL  SPA
Sbjct: 274 VQAAHIRIKGHHASDIYQVGHAILQAFSEYSLLKLPFSPA 313


>01_06_0418 +
           29210310-29210612,29211154-29211541,29211946-29212143,
           29212626-29213092,29213210-29213749,29214275-29214477,
           29214567-29214624
          Length = 718

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -3

Query: 691 KTNPRVQYLNLQLV*KHQLVMMLI*RTLLLSMPEAHDELDTCR 563
           KT P V+ LNL LV K   VM++     L+ +    D  D CR
Sbjct: 580 KTTPVVEALNLMLVEKQPFVMIIESNRSLIGLVTLKDIQDFCR 622


>12_01_0013 -
           99290-99299,99593-99703,100085-100587,100925-100995,
           101413-101491,102336-102956
          Length = 464

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 511 ERLINVYCTHLHAEYHEDDMYL 576
           +R+I  Y  HL A++H+DD+ L
Sbjct: 37  DRIIAFYLAHLAADHHDDDLLL 58


>01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,
            7161372-7162820
          Length = 1057

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/46 (28%), Positives = 26/46 (56%)
 Frame = +3

Query: 252  GIPVVSKNKKERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENL 389
            GI     N+KE +EA+++ +  ++ N + L  V S  D+L  + ++
Sbjct: 966  GITSHQMNRKEHFEALNSGMFSAKWNALQLGSVSSSADFLSARNSI 1011


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,417,363
Number of Sequences: 37544
Number of extensions: 434154
Number of successful extensions: 1078
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1078
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)