Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00817
         (795 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)           79   3e-15
SB_35359| Best HMM Match : No HMM Matches (HMM E-Value=.)              74   1e-13
SB_4971| Best HMM Match : Ras (HMM E-Value=0)                          31   1.4  
SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.3  
SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)                  29   5.7  
SB_54399| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_36751| Best HMM Match : Exo_endo_phos (HMM E-Value=2e-12)
          Length = 906

 Score = 79.4 bits (187), Expect = 3e-15
 Identities = 35/74 (47%), Positives = 52/74 (70%), Gaps = 1/74 (1%)
 Frame = +1

Query: 514 RLINVYCTHLHAEYH-EDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLS 690
           R I+ + THLHAEY+ ++D YLAHRV QAY  A+F++  + P+D  I+ GD+N+ P D+ 
Sbjct: 310 RPIHFFTTHLHAEYNRKNDEYLAHRVTQAYQLAQFIEHATQPSDCVIVCGDMNSEPTDMC 369

Query: 691 YKIISQLPSLLDPY 732
           Y+I+  LP L D +
Sbjct: 370 YRILCYLPGLTDTW 383



 Score = 46.4 bits (105), Expect = 3e-05
 Identities = 21/42 (50%), Positives = 26/42 (61%)
 Frame = +2

Query: 422 QWPLNGYIHKIHHGDWFGGKGVGLCRIKFGRDSSMSIAHIFT 547
           ++ LNGY++KI HGDWFGGK  G C I    D  +   H FT
Sbjct: 279 RYTLNGYMYKIAHGDWFGGKSSGYCVI----DHPLRPIHFFT 316


>SB_35359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 74.1 bits (174), Expect = 1e-13
 Identities = 33/65 (50%), Positives = 46/65 (70%), Gaps = 1/65 (1%)
 Frame = +1

Query: 541 LHAEYH-EDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLNTAPGDLSYKIISQLPS 717
           LHAEY+ +DD YLAHRV QAY  A+ ++L + P+D  I+ GD+N+ P DL Y+I+  LP 
Sbjct: 1   LHAEYNRQDDEYLAHRVTQAYQFAQLIELITKPSDCVIVCGDMNSEPTDLCYRILCNLPG 60

Query: 718 LLDPY 732
           L D +
Sbjct: 61  LTDTW 65


>SB_4971| Best HMM Match : Ras (HMM E-Value=0)
          Length = 209

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/44 (29%), Positives = 26/44 (59%)
 Frame = +3

Query: 279 KERYEAISTYLLKSEHNIVCLQEVWSEKDYLYLKENLKNVLPYS 410
           +ER+  ++T   +S H IV + +V   + +L+L + L+ V  Y+
Sbjct: 67  QERFRTLTTAYYRSAHGIVLIYDVNESETFLHLSQWLEEVSEYA 110


>SB_56973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 628

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 4/87 (4%)
 Frame = +3

Query: 285 RYEAISTYLLKSEHNIVCLQEVWSEKD----YLYLKENLKNVLPYSYYFYSGP*MGTYTK 452
           R  A++TYLLK  H + C  E  +++      L L + +        YFY+    G Y +
Sbjct: 362 RSVAMTTYLLKQNHQLSCYGEHENKRHTRLACLALSQAITVCEDVGIYFYNAKPPG-YRQ 420

Query: 453 YIMVTGLEEKVWVSVGSSLGETHQCLL 533
           +      ++   + + ++ GE HQC L
Sbjct: 421 FQTKGRSDKGNELHILTTAGECHQCKL 447


>SB_4831| Best HMM Match : E-MAP-115 (HMM E-Value=1.8)
          Length = 1151

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -1

Query: 489 PTPFPPNQSP*CILCMYPFKGHCKSS 412
           P+PFPP++SP    CM P K   K S
Sbjct: 37  PSPFPPSKSPDSPYCMEPPKPTPKES 62


>SB_54399| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 185

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 531 IDIDESLPNLIRQRPTPFPP--NQSP*CILCMYPFKGHCKSS 412
           +D+ E +   +++  T  P    + P C  C  P KGH K++
Sbjct: 142 VDVPEDIRAAVQEEATAAPKARKREPRCTKCNAPMKGHSKNN 183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,426,927
Number of Sequences: 59808
Number of extensions: 523954
Number of successful extensions: 1374
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1373
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2191792647
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)