Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00817
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase fa...    33   0.29 
At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase fa...    33   0.29 
At1g31500.3 68414.m03859 endonuclease/exonuclease/phosphatase fa...    30   1.5  
At5g60220.1 68418.m07548 senescence-associated family protein si...    30   2.0  
At4g34260.1 68417.m04869 expressed protein                             30   2.0  
At1g65170.1 68414.m07389 ubiquitin carboxyl-terminal hydrolase f...    29   2.7  
At4g14100.1 68417.m02174 expressed protein                             28   8.2  

>At1g31500.2 68414.m03858 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 383

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 508 WERLINVYCTHLHAEYHEDDMYLAHRVLQAYSTAEFVKLTSSPADVS---ILAGDLNTAP 678
           ++ ++ V  THL+ +    D+ LA         A+F  L S   + +   +LAGD N+ P
Sbjct: 220 FQHIVIVANTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDEFECTPSLLLAGDFNSIP 279

Query: 679 GDLSYKII 702
           GD+ Y  +
Sbjct: 280 GDMVYSYL 287


>At1g31500.1 68414.m03857 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 388

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
 Frame = +1

Query: 508 WERLINVYCTHLHAEYHEDDMYLAHRVLQAYSTAEFVKLTSSPADVS---ILAGDLNTAP 678
           ++ ++ V  THL+ +    D+ LA         A+F  L S   + +   +LAGD N+ P
Sbjct: 225 FQHIVIVANTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDEFECTPSLLLAGDFNSIP 284

Query: 679 GDLSYKII 702
           GD+ Y  +
Sbjct: 285 GDMVYSYL 292


>At1g31500.3 68414.m03859 endonuclease/exonuclease/phosphatase
           family protein low similarity to SP|P31384
           Glucose-repressible alcohol dehydrogenase
           transcriptional effector (Carbon catabolite repressor
           protein 4) {Saccharomyces cerevisiae}; contains Pfam
           profile PF03372: Endonuclease/Exonuclease/phosphatase
           family
          Length = 283

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
 Frame = +1

Query: 508 WERLINVYCTHLHAEYHEDDMYLAHRVLQAYSTAEFVKLTSSPADVS---ILAGDLNTAP 678
           ++ ++ V  THL+ +    D+ LA         A+F  L S   + +   +LAGD N+ P
Sbjct: 220 FQHIVIVANTHLYWDPELADVKLAQAKYLLSRLAQFKTLISDEFECTPSLLLAGDFNSIP 279

Query: 679 GDL 687
           GD+
Sbjct: 280 GDM 282


>At5g60220.1 68418.m07548 senescence-associated family protein
           similar to senescence-associated protein 5 [Hemerocallis
           hybrid cultivar] gi|3551954|gb|AAC34855
          Length = 327

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 465 TGLEEKVWVSVGSSLGETHQCLLHTSSRRIPRRRHVSSSSCASGILNS 608
           T + E VW+  G  +G    C+L  + +R+        SSC +G+L S
Sbjct: 184 TYVNETVWIPGGEMVGPNPDCMLWNNDQRL---LCYQCSSCKAGVLGS 228


>At4g34260.1 68417.m04869 expressed protein 
          Length = 843

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/57 (31%), Positives = 26/57 (45%)
 Frame = +1

Query: 499 DQVWERLINVYCTHLHAEYHEDDMYLAHRVLQAYSTAEFVKLTSSPADVSILAGDLN 669
           D +W  +   Y      E   +   L      A +T+E VKL+  P+DV  + GDLN
Sbjct: 92  DTIWTGVPADYTNQKAPEALAEVRRLVDERNYAEATSEAVKLSGQPSDVYQIVGDLN 148


>At1g65170.1 68414.m07389 ubiquitin carboxyl-terminal hydrolase
           family protein contains Pfam profile PF00443: Ubiquitin
           carboxyl-terminal hydrolase
          Length = 259

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +1

Query: 340 CKKFGVKKITYI*RRT*RMYSHILTTFTVALEWVHTQ 450
           C K G  K  Y+ R    M + + T FT+ALEW H +
Sbjct: 112 CDKEGCGKRNYVQR----MINKLPTVFTIALEWEHNE 144


>At4g14100.1 68417.m02174 expressed protein
          Length = 206

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +3

Query: 339 LQEVWSEKDYLYLKENLKNVLPYSYYFYSGP*MGTYTKYIMVTGLEEKVW 488
           L  VW + D+++  E+++   P  + FY+G      T Y +   LE++ W
Sbjct: 126 LCNVWEKVDFIWYYEDVETKRPVQWIFYTGREAHIMT-YEVGAVLEDEKW 174


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,205,634
Number of Sequences: 28952
Number of extensions: 373842
Number of successful extensions: 961
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 961
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)