Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00816
         (787 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0799 - 21317728-21317895,21318018-21318146,21318396-213184...    32   0.45 
10_08_0996 - 22112020-22112859                                         28   7.3  
08_01_0383 - 3405986-3407359,3409283-3410827                           28   7.3  
07_03_0302 + 16459742-16459795,16459894-16460067,16460160-164602...    28   7.3  
04_03_0630 - 18182681-18182931,18183397-18183463,18184899-181849...    28   9.7  

>08_02_0799 -
           21317728-21317895,21318018-21318146,21318396-21318457,
           21318519-21318534,21318590-21318694,21318993-21319133,
           21319338-21319412,21319510-21319611,21319697-21319792,
           21320340-21320451,21320642-21320715,21321016-21321097,
           21321201-21321508
          Length = 489

 Score = 32.3 bits (70), Expect = 0.45
 Identities = 17/58 (29%), Positives = 31/58 (53%)
 Frame = +1

Query: 49  GREEQVEAARKQLETAVAEISNVSEGEMSVALKHHRHFVARRGEVLRRIAEDCGGVQI 222
           G +  VE A++ + +A  E+    +GE  V L+H  H +  +G  +  +AE  G +Q+
Sbjct: 312 GFDTAVEEAQRAINSAYIEVPFTLDGEYGV-LRHLEHLLKTKGFCVVCVAEAAGQIQL 368


>10_08_0996 - 22112020-22112859
          Length = 279

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +1

Query: 34  AIFIMGREEQVEAARKQLETAVAEIS 111
           A+F  G EE V+A +K   TA AEI+
Sbjct: 198 AVFFAGEEELVQALQKHAATAEAEIA 223


>08_01_0383 - 3405986-3407359,3409283-3410827
          Length = 972

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/68 (26%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
 Frame = -1

Query: 340 VTFASKSSIISLIRALAT-SIHSFGPLSTTGRC*HLAEEKKFVLHHNPRQYDVALHLDAP 164
           V +A K  ++ +  ++   S++  GPL  T +  H   + +FV  H P ++ +++H+   
Sbjct: 678 VVYAWKLQLVHVPHSITVFSLNRTGPLEQTAKLMH---KWQFVGPHLPDEFYLSIHILTG 734

Query: 163 RSDDDVSM 140
            S+ +VSM
Sbjct: 735 TSNGNVSM 742


>07_03_0302 +
           16459742-16459795,16459894-16460067,16460160-16460233,
           16460593-16460626,16460772-16460830,16461039-16461153,
           16461251-16461288,16461374-16461471,16461590-16461645,
           16461957-16462239,16462532-16462647,16463278-16463334,
           16463686-16463751,16464020-16464094,16464286-16464324
          Length = 445

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 18/64 (28%), Positives = 36/64 (56%), Gaps = 3/64 (4%)
 Frame = +3

Query: 537 VALKIAKELKRLFLNRCLLQLTLKCPMNCIVY*LVKK---GEN*CQHMMFTSYCHPMKIP 707
           VA+KIA ELK+L ++  LL ++ +  +   ++ L++K   GE+        +  H  ++P
Sbjct: 81  VAIKIALELKKLLVDNSLLDVS-QSDLEANLFKLMEKRGYGEDYINRYKMMTRFHHQRVP 139

Query: 708 VTLL 719
           + +L
Sbjct: 140 LVVL 143


>04_03_0630 -
           18182681-18182931,18183397-18183463,18184899-18184964,
           18185057-18185178,18185263-18185425,18186082-18186329,
           18186418-18186751,18186857-18187000,18187079-18187144
          Length = 486

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/52 (23%), Positives = 27/52 (51%)
 Frame = +2

Query: 608 VPNELHRLLAGQKRRELMPTYDVHILLPPNEDTSDIVKVTGTPTSVENAKQA 763
           V N++ R + G+  +E+ P  ++ +  PP++    +   +   TSV   ++A
Sbjct: 132 VLNDILRYVGGEGDQEVEPEPELELSFPPSQQPDSVPAPSANGTSVPREQEA 183


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,734,199
Number of Sequences: 37544
Number of extensions: 431720
Number of successful extensions: 1395
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1395
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)