Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00816
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g35150.1 68417.m04997 O-methyltransferase family 2 protein si...    31   0.66 
At1g18370.1 68414.m02295 kinesin motor family protein (NACK1) si...    31   1.1  
At4g35540.1 68417.m05051 expressed protein transcription factor ...    30   1.5  
At4g29820.1 68417.m04245 expressed protein                             29   2.6  
At3g60910.1 68416.m06814 expressed protein low similarity to PIR...    29   2.6  
At5g51650.1 68418.m06404 hypothetical protein                          29   4.6  
At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein ...    29   4.6  
At1g33680.1 68414.m04166 KH domain-containing protein similar to...    29   4.6  
At5g40230.1 68418.m04881 nodulin-related low similarity to MtN21...    28   6.1  
At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)              28   6.1  
At3g57660.1 68416.m06424 DNA-directed RNA polymerase family prot...    28   6.1  

>At4g35150.1 68417.m04997 O-methyltransferase family 2 protein
           similar to caffeic acid O-methyltransferase, Pinus
           taeda, gb:U39301
          Length = 325

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 12/55 (21%), Positives = 30/55 (54%)
 Frame = +3

Query: 267 GPKECIEVAKARINEIIEDLEAKVTIECVIPQRHHRTVMGARGAKVKDITAEFDV 431
           G K+CI++ K     ++ ++   + +ECVI ++ +  +   R  K++ +  + D+
Sbjct: 225 GDKDCIKILKNCKEAVLPNIGKVLIVECVIGEKKNTMIAEERDDKLEHVRLQLDM 279


>At1g18370.1 68414.m02295 kinesin motor family protein (NACK1)
           similar to kinesin heavy chain isolog GB:AAB63609
           GI:2262101 from [Arabidopsis thaliana]
          Length = 974

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +1

Query: 43  IMGREEQVEAARKQLETAVAEI-SNVSEGEMSVALKHHRH 159
           I   EEQ+E+ +K ++  V  + SN+S G+ +   K+H H
Sbjct: 582 IANLEEQLESVQKSIDKLVMSLPSNISAGDETPKTKNHHH 621


>At4g35540.1 68417.m05051 expressed protein transcription factor
           IIIB chain BRF1, Saccharomycescerevisiae, PIR2:A44072
          Length = 527

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +1

Query: 28  KEAIFIMGREEQVEAARKQLETAVAEISNVSEGEMSVALKHHR 156
           K  + +  R E+++AA+ ++        NVSEG +S+ L+H +
Sbjct: 437 KGCVAVERRREKIKAAKLRINAIQHPSDNVSEGALSLELEHSK 479


>At4g29820.1 68417.m04245 expressed protein
          Length = 222

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 195 CRGLWWSTNFFSSARCQQRPVVLKGPKECIEVAKARI 305
           C G+WW  N F +      P  +K PKEC ++   R+
Sbjct: 137 CIGMWWRPN-FETLMYPFLPPNIKHPKECTKLFLVRL 172


>At3g60910.1 68416.m06814 expressed protein low similarity to
           PIR|I46078 endothelin converting enzyme from Bos
           primigenius taurus
          Length = 252

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/27 (37%), Positives = 19/27 (70%)
 Frame = +2

Query: 539 RPENCEGAKKALLEQVPITIDVEVPNE 619
           RPE+C  + K+ +E +PIT +  +P++
Sbjct: 191 RPESCSSSAKSCMEAIPITSEGMLPHD 217


>At5g51650.1 68418.m06404 hypothetical protein 
          Length = 206

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = +1

Query: 22  EDKEAIFIMGREEQVEAARKQLETAVAEISNVSEGEMSVALKHHRH 159
           E KE +   G+EE VE    + E   A +S   +G +SVA  +  H
Sbjct: 40  ERKEGLEAQGKEEGVEKVLVEKEKEEAHVSWEKDGSVSVAYTYAIH 85


>At4g00840.1 68417.m00115 zinc finger (DHHC type) family protein
           contains Pfam profile PF01529: DHHC zinc finger domain
          Length = 262

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 323 FGSKGYD*MCDSTKTSPNCHGCTWCQSQ 406
           FGS GY   C + K  P CH C+ C+++
Sbjct: 42  FGSLGYCTKCRNVKP-PRCHHCSVCKAK 68


>At1g33680.1 68414.m04166 KH domain-containing protein similar to
           FUSE binding protein 2 GB:AAC50892 GI:1575607 from [Homo
           sapiens]
          Length = 759

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 249 RPVVLKGPKECIEVAKARINEIIEDLEA 332
           RPV + G   CIE A+  IN +I ++EA
Sbjct: 280 RPVEIIGTVSCIEKAEKLINAVIAEVEA 307


>At5g40230.1 68418.m04881 nodulin-related low similarity to MtN21
           [Medicago truncatula] GI:2598575; contains Pfam profile
           PF00892: Integral membrane protein
          Length = 370

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = -3

Query: 290 YFNTFFWSLKHDRSLLTPCRGKEICTPPQSSAIRRST 180
           +FN F  +L    SL+  C+G E  +P  +SAI   T
Sbjct: 85  FFNIFLLALVGFMSLIVGCKGIEYSSPTLASAISNLT 121


>At5g35530.1 68418.m04226 40S ribosomal protein S3 (RPS3C)
          Length = 248

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
 Frame = +3

Query: 285 EVAKARINEIIED----LEAKVT---IECVIPQRHHRTVMGARGAKVKDITAEFDVQIKF 443
           E+ +    E+ ED    +E +VT    E +I     + V+G +G +++++T+    + KF
Sbjct: 20  ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIRELTSLVQKRFKF 79

Query: 444 PERDTTE 464
           P+ D+ E
Sbjct: 80  PQ-DSVE 85


>At3g57660.1 68416.m06424 DNA-directed RNA polymerase family protein
            similar to SP|O35134 DNA-directed RNA polymerase I
            largest subunit (EC 2.7.7.6) (RNA polymerase I 194 kDa
            subunit) (RPA194) {Mus musculus}; contains InterPro
            accession IPR000722: RNA polymerase, alpha subunit
          Length = 1670

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 20/110 (18%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
 Frame = +1

Query: 160  FVARRGEVLRRIAEDCGGVQISFPRQGVNSDRSCLRDQKNVLK*LKHESMKLLRIWKQRL 339
            ++   G++ R    +CG  Q+ +        R    D+K     L    +    +W+ + 
Sbjct: 1482 YIQNSGKIERCTVANCGDPQVIYHGDNPKERREISNDEKKASPALHASGVDFPALWEFQD 1541

Query: 340  RLNV--*FHKDITELSWVHVVPKSRTSL---LNLMFKSNSLNVTLQKVQM 474
            +L+V   +   I ++  +  V  +R ++   +N +FKS  ++V+++ + +
Sbjct: 1542 KLDVRYLYSNSIHDMLNIFGVEAARETIIREINHVFKSYGISVSIRHLNL 1591


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,878,429
Number of Sequences: 28952
Number of extensions: 351906
Number of successful extensions: 1221
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)