Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00815
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   1.9  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    27   1.9  
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    27   2.6  
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    27   3.4  
SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces...    26   4.5  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   4.5  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    26   5.9  

>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
 Frame = -1

Query: 611 KRIG--DFSYLIVFFEQHLQKFPIAALASFKPLYSLHFIK 498
           KRIG  DF++L V  + +  K  +A L S K LY++  +K
Sbjct: 676 KRIGLEDFTFLSVLGKGNFGKVMLAELKSEKQLYAIKVLK 715


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 313 LPDGNSWCPDCVEAEP-VVRHYLSELDKSIIFVYVDVGDREYWK 441
           LP G  WC  C+  +P ++R ++  L    +F+   V   E+WK
Sbjct: 688 LPPG--WCEYCLAHQPFLLRSFIRSL-PDCLFINTQVKHHEHWK 728


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = -1

Query: 680 YFMVHNIIYSYIIVGNLSIRICLKRIGDFSYLIVFFEQHLQKFPIAALASFK-PLYSLHF 504
           Y ++H ++     V  L   + +    DF YL +F E+H   F      +F  P +SL  
Sbjct: 708 YVVIHTLLKVIFSVVPLPFDVPVDNSVDFPYLRLFLEKHADDFFRCLEVAFDYPYFSLEK 767

Query: 503 IKV 495
           + +
Sbjct: 768 VTI 770


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 54  DYHYMYLMIILPNALYRIFINFSIHNLTVGNLYV 155
           DY ++ +  I+P  +Y +F  F IH   V +LY+
Sbjct: 133 DYRWVRVRQIMPKWIYPLFHYFYIHIFQVLHLYL 166


>SPCC1840.08c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
 Frame = -1

Query: 539 LASFKPLYSLHFIKVGMTINLERLS--VLNGHSLSFQYS 429
           L  F PLY     KV  T+N+ RL   V   H ++F YS
Sbjct: 262 LVGFAPLYRTDDEKVIKTLNVTRLPHLVAIRHGVAFSYS 300


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +3

Query: 57  YHYMYLMIILPNALYRIFINFSIHNLTVGNLYVFK 161
           +H M+ ++I   AL  +F N  IH+       VFK
Sbjct: 493 FHVMHQLVIATTALRSMFTNAEIHDFDGDEEEVFK 527


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 209 MVINLDLKGFEEFSKLLVQLILVVPLYFFTLAVQNYLMAIA 331
           +++NL +  +E+    L Q +L +   FF   VQN L  IA
Sbjct: 320 ILLNLKISDYEKAFSTLQQALLFLTSSFFNEFVQNNLEIIA 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,815,777
Number of Sequences: 5004
Number of extensions: 59023
Number of successful extensions: 140
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)