Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00815
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0146 - 12274721-12274989,12275090-12275240                       55   5e-08
11_02_0068 + 7991816-7992603,7995209-7997177                           29   2.6  
09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800     29   3.5  
07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987...    29   4.6  
08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292     28   6.1  
08_02_0648 - 19694538-19696569,19697151-19697998                       28   6.1  
07_03_1367 + 26072270-26072374,26074047-26074724                       28   8.1  
04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504...    28   8.1  

>06_02_0146 - 12274721-12274989,12275090-12275240
          Length = 139

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
 Frame = +1

Query: 268 DSRGPPVFFYFSGSKLPDGN-SWCPDCVEAEPVVRHYLSEL----DKSIIFVYVDVGDRE 432
           D+ G      F   +    N +WCPDC  AEPV+   +       +K ++ +   VGD+ 
Sbjct: 26  DAEGKVKLLLFLADRDASSNQTWCPDCNVAEPVIYDRVEAAAKGKEKDVVLLRAYVGDKP 85

Query: 433 YWKDKECPFRTDSRSKLMVIPTLIK 507
            W+D   P+R D R +L  +PTLI+
Sbjct: 86  TWRDPAHPWRADPRFRLTGVPTLIR 110


>11_02_0068 + 7991816-7992603,7995209-7997177
          Length = 918

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +1

Query: 364 VRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLI 504
           +R YLS  DK  I +  D+ D + WK  EC    + R   ++  T I
Sbjct: 255 LREYLS--DKRYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTTRI 299


>09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800
          Length = 863

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 48  IYDYHYMYLMIILPNALYRIFINFSIHN 131
           ++DYH M L   L   L+RI I F +H+
Sbjct: 203 VHDYHLMLLPTFLRKKLHRIKIGFFLHS 230


>07_03_1583 -
           27898375-27898436,27898455-27898539,27898621-27898768,
           27899009-27899028,27899135-27899236,27899743-27899812,
           27899956-27900012,27902324-27902484,27902742-27902761,
           27902997-27903069,27903077-27903169,27903456-27903496,
           27903597-27903858
          Length = 397

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = -1

Query: 359 GSASTQSGHQLLPSGSFEPLK*KNTGGPRESIARVI 252
           GSA+  S    LP+ +  P+  + TGGPR  + R +
Sbjct: 14  GSAAAASSSVSLPASTRAPVLHRTTGGPRRRLQRCL 49


>08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292
          Length = 862

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +3

Query: 48  IYDYHYMYLMIILPNALYRIFINFSIHN 131
           ++DYH M L   L   L+RI + F +H+
Sbjct: 202 VHDYHLMLLPTFLRKRLHRIKLGFFLHS 229


>08_02_0648 - 19694538-19696569,19697151-19697998
          Length = 959

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 11/40 (27%), Positives = 24/40 (60%)
 Frame = +1

Query: 388 DKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 507
           +KS   +  DV  ++ WKD +C F +++ +  +++ T I+
Sbjct: 281 NKSYFVLIDDVWSKQAWKDIQCAFPSNNNASRIMMTTRIQ 320


>07_03_1367 + 26072270-26072374,26074047-26074724
          Length = 260

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 301 SGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSI 399
           S +KL DG  W  DC + +P+    + +L+K +
Sbjct: 64  SYNKLIDGKMWLEDCNKEDPLDPTQIQDLEKQL 96


>04_04_1592 -
           34649484-34649547,34650118-34650186,34650325-34650444,
           34650630-34650742,34650824-34650898,34651224-34651346,
           34651427-34651446,34652354-34652410,34652922-34653860,
           34653961-34654189,34654296-34654439,34654527-34654601,
           34655363-34655433,34656103-34656205,34656407-34656633,
           34656791-34656908,34657239-34657369,34657709-34657802
          Length = 923

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 362 TGSASTQSGHQLLPSGSFEPLK*KNTGGPRESIARVISKILQN 234
           TG+++  +GH  L S S   +  +N  G R +I R+   +LQN
Sbjct: 328 TGTSTKLNGHSELKSSSSSTMPLQNDSGSRANIGRL--SVLQN 368


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,536,262
Number of Sequences: 37544
Number of extensions: 326084
Number of successful extensions: 671
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 670
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)