BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= wdS00815 (692 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 06_02_0146 - 12274721-12274989,12275090-12275240 55 5e-08 11_02_0068 + 7991816-7992603,7995209-7997177 29 2.6 09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 29 3.5 07_03_1583 - 27898375-27898436,27898455-27898539,27898621-278987... 29 4.6 08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292 28 6.1 08_02_0648 - 19694538-19696569,19697151-19697998 28 6.1 07_03_1367 + 26072270-26072374,26074047-26074724 28 8.1 04_04_1592 - 34649484-34649547,34650118-34650186,34650325-346504... 28 8.1 >06_02_0146 - 12274721-12274989,12275090-12275240 Length = 139 Score = 55.2 bits (127), Expect = 5e-08 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 5/85 (5%) Frame = +1 Query: 268 DSRGPPVFFYFSGSKLPDGN-SWCPDCVEAEPVVRHYLSEL----DKSIIFVYVDVGDRE 432 D+ G F + N +WCPDC AEPV+ + +K ++ + VGD+ Sbjct: 26 DAEGKVKLLLFLADRDASSNQTWCPDCNVAEPVIYDRVEAAAKGKEKDVVLLRAYVGDKP 85 Query: 433 YWKDKECPFRTDSRSKLMVIPTLIK 507 W+D P+R D R +L +PTLI+ Sbjct: 86 TWRDPAHPWRADPRFRLTGVPTLIR 110 >11_02_0068 + 7991816-7992603,7995209-7997177 Length = 918 Score = 29.5 bits (63), Expect = 2.6 Identities = 16/47 (34%), Positives = 23/47 (48%) Frame = +1 Query: 364 VRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLI 504 +R YLS DK I + D+ D + WK EC + R ++ T I Sbjct: 255 LREYLS--DKRYIVIVDDIWDMQIWKFIECALVKNCRGSRIITTTRI 299 >09_03_0129 - 12590983-12591315,12591432-12591705,12591816-12593800 Length = 863 Score = 29.1 bits (62), Expect = 3.5 Identities = 12/28 (42%), Positives = 17/28 (60%) Frame = +3 Query: 48 IYDYHYMYLMIILPNALYRIFINFSIHN 131 ++DYH M L L L+RI I F +H+ Sbjct: 203 VHDYHLMLLPTFLRKKLHRIKIGFFLHS 230 >07_03_1583 - 27898375-27898436,27898455-27898539,27898621-27898768, 27899009-27899028,27899135-27899236,27899743-27899812, 27899956-27900012,27902324-27902484,27902742-27902761, 27902997-27903069,27903077-27903169,27903456-27903496, 27903597-27903858 Length = 397 Score = 28.7 bits (61), Expect = 4.6 Identities = 13/36 (36%), Positives = 20/36 (55%) Frame = -1 Query: 359 GSASTQSGHQLLPSGSFEPLK*KNTGGPRESIARVI 252 GSA+ S LP+ + P+ + TGGPR + R + Sbjct: 14 GSAAAASSSVSLPASTRAPVLHRTTGGPRRRLQRCL 49 >08_02_0666 - 19823490-19823822,19823912-19824185,19824311-19826292 Length = 862 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/28 (39%), Positives = 17/28 (60%) Frame = +3 Query: 48 IYDYHYMYLMIILPNALYRIFINFSIHN 131 ++DYH M L L L+RI + F +H+ Sbjct: 202 VHDYHLMLLPTFLRKRLHRIKLGFFLHS 229 >08_02_0648 - 19694538-19696569,19697151-19697998 Length = 959 Score = 28.3 bits (60), Expect = 6.1 Identities = 11/40 (27%), Positives = 24/40 (60%) Frame = +1 Query: 388 DKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 507 +KS + DV ++ WKD +C F +++ + +++ T I+ Sbjct: 281 NKSYFVLIDDVWSKQAWKDIQCAFPSNNNASRIMMTTRIQ 320 >07_03_1367 + 26072270-26072374,26074047-26074724 Length = 260 Score = 27.9 bits (59), Expect = 8.1 Identities = 11/33 (33%), Positives = 19/33 (57%) Frame = +1 Query: 301 SGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSI 399 S +KL DG W DC + +P+ + +L+K + Sbjct: 64 SYNKLIDGKMWLEDCNKEDPLDPTQIQDLEKQL 96 >04_04_1592 - 34649484-34649547,34650118-34650186,34650325-34650444, 34650630-34650742,34650824-34650898,34651224-34651346, 34651427-34651446,34652354-34652410,34652922-34653860, 34653961-34654189,34654296-34654439,34654527-34654601, 34655363-34655433,34656103-34656205,34656407-34656633, 34656791-34656908,34657239-34657369,34657709-34657802 Length = 923 Score = 27.9 bits (59), Expect = 8.1 Identities = 15/43 (34%), Positives = 24/43 (55%) Frame = -1 Query: 362 TGSASTQSGHQLLPSGSFEPLK*KNTGGPRESIARVISKILQN 234 TG+++ +GH L S S + +N G R +I R+ +LQN Sbjct: 328 TGTSTKLNGHSELKSSSSSTMPLQNDSGSRANIGRL--SVLQN 368 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,536,262 Number of Sequences: 37544 Number of extensions: 326084 Number of successful extensions: 671 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 661 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 670 length of database: 14,793,348 effective HSP length: 80 effective length of database: 11,789,828 effective search space used: 1768474200 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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