Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00815
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8320| Best HMM Match : p450 (HMM E-Value=0)                         31   0.89 
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)                   28   8.3  

>SB_8320| Best HMM Match : p450 (HMM E-Value=0)
          Length = 1207

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +2

Query: 167 YKNLLN*SSTALPKMVINLDLKGFEEFSKLLVQ 265
           ++ LL   ST L K + NL+ K FE++ K+L Q
Sbjct: 742 WQTLLETRSTTLGKAIFNLEKKNFEKYGKILRQ 774


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 17/50 (34%), Positives = 29/50 (58%)
 Frame = +3

Query: 498  FNKMKGVQRLEGSQCSNRELLQMLFEEDD*IRKITNSFKADSNTKITNYN 647
            F++++GVQ +EG Q  +RE+ +   EED+  R  T +  + S T    Y+
Sbjct: 4620 FHEIEGVQSIEGIQPGDREVFRDT-EEDESERADTGAASSPSTTPRPTYS 4668


>SB_37693| Best HMM Match : PHD (HMM E-Value=8.7e-35)
          Length = 2049

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 313  LPDGNSWCPDCVEAEP 360
            +P+GN +CPDC   EP
Sbjct: 1661 IPEGNWFCPDCRPKEP 1676


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,717,162
Number of Sequences: 59808
Number of extensions: 388819
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)