Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00815
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical ...    74   1e-13
Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical p...    31   1.0  
AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical ...    29   2.4  
AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arr...    29   4.2  
Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U23511-9|AAC46796.1|  140|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U23511-8|AAU20849.1|  167|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical pr...    28   7.3  
X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy ch...    28   7.3  
U80029-11|AAB37590.1|  155|Caenorhabditis elegans Hypothetical p...    28   7.3  
AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine re...    28   7.3  

>AC024860-1|AAK29986.1|  132|Caenorhabditis elegans Hypothetical
           protein Y71H2AR.1 protein.
          Length = 132

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 41/91 (45%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
 Frame = +1

Query: 247 FEITRAIDSRGPPVFFYFSGSK-LPDGNSWCPDCVEAEPVVRHYLSELDKS---IIFVYV 414
           F+ T     +G  V   F+GSK L  G SWCPDCV AEPVV   + +   +   + FV V
Sbjct: 15  FQETLKSIGKGKRVVALFTGSKILTTGESWCPDCVVAEPVVEEVIKDAAVAGLDVHFVTV 74

Query: 415 DVGDREYWKDKECPFRTDSRSKLMVIPTLIK 507
            VG+RE W+D    FRTD   KL  IPTL++
Sbjct: 75  FVGNREVWRDPAVGFRTDPTLKLTCIPTLLE 105


>Z81038-12|CAB02758.2|  380|Caenorhabditis elegans Hypothetical
           protein C25A1.3 protein.
          Length = 380

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +1

Query: 334 CPDCVEAEPVVRHYLSELDKSIIFVY 411
           CP+ +   P+V+H L ELD  ++FV+
Sbjct: 228 CPEFLAYFPLVKHLLEELDMELLFVH 253


>AL031632-3|CAA21006.1|  283|Caenorhabditis elegans Hypothetical
           protein Y32B12B.3 protein.
          Length = 283

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 18/57 (31%), Positives = 30/57 (52%)
 Frame = -1

Query: 680 YFMVHNIIYSYIIVGNLSIRICLKRIGDFSYLIVFFEQHLQKFPIAALASFKPLYSL 510
           +FM+  II   I+   L + I + R+G   + I +F+ H +KFPI+ +      Y L
Sbjct: 82  FFMLWPIIPLGIVRSILMLSINIDRLGALYFPIFYFKYH-RKFPISIIVILTLTYIL 137


>AF016687-3|AAC48090.1|  375|Caenorhabditis elegans Paralysed arrest
           at two-fold protein6 protein.
          Length = 375

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = +2

Query: 245 FSKLLVQLI--LVVPLYFFTLAVQNYLMAIAGAPTAWKLNQSSGI 373
           F  LLV L+    VPLY F L VQ++   +     A+KL + +G+
Sbjct: 299 FLVLLVGLLEGYFVPLYHFNLQVQSHEEKVKNVQFAFKLMEDTGL 343


>Z81095-3|CAB03159.2|  494|Caenorhabditis elegans Hypothetical
           protein F59F4.3 protein.
          Length = 494

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 105 IFINFSIHNLTVGNLYVFKK-YIKIY*TNQALHFPKWLLT 221
           ++ N  I  LT    Y FK+ Y  +Y TN++ HF K L++
Sbjct: 69  VWANLVIKKLTKYPDYTFKQLYYALYTTNRSAHFTKRLMS 108


>U23511-9|AAC46796.1|  140|Caenorhabditis elegans Hypothetical
           protein C32D5.8a protein.
          Length = 140

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 229 KRF*RIFEITRAIDSRGPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFV 408
           KR   + + T A+   G  V FYFS         WCP C    P+++ +  E++     V
Sbjct: 11  KRDKTLVDATEAL--AGKAVGFYFSAH-------WCPPCRGFTPILKDFYEEVEDEFEVV 61

Query: 409 YV 414
           +V
Sbjct: 62  FV 63


>U23511-8|AAU20849.1|  167|Caenorhabditis elegans Hypothetical
           protein C32D5.8b protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 229 KRF*RIFEITRAIDSRGPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFV 408
           KR   + + T A+   G  V FYFS         WCP C    P+++ +  E++     V
Sbjct: 38  KRDKTLVDATEAL--AGKAVGFYFSAH-------WCPPCRGFTPILKDFYEEVEDEFEVV 88

Query: 409 YV 414
           +V
Sbjct: 89  FV 90


>U00052-1|AAK95880.2|  308|Caenorhabditis elegans Hypothetical
           protein K02F3.5 protein.
          Length = 308

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +1

Query: 268 DSRGPPVFFYFSGSKLPDGNSWCPDCVEAE 357
           +S G PV FY  G K PD      +CVE +
Sbjct: 257 NSDGTPVDFYKWGKKQPDNQEHNENCVEVD 286


>Z68119-8|CAA92197.2| 1947|Caenorhabditis elegans Hypothetical
           protein T18D3.4 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 297 VKKYRGTTRINCTSNFENSSKPFRSRLITIL 205
           ++ Y GT R NC +  E +  P    ++T++
Sbjct: 585 MRHYAGTVRYNCLNWLEKNKDPLNDTVVTVM 615


>Z68117-6|CAA92183.2| 1947|Caenorhabditis elegans Hypothetical
           protein T18D3.4 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 297 VKKYRGTTRINCTSNFENSSKPFRSRLITIL 205
           ++ Y GT R NC +  E +  P    ++T++
Sbjct: 585 MRHYAGTVRYNCLNWLEKNKDPLNDTVVTVM 615


>X08066-1|CAA30855.1| 1947|Caenorhabditis elegans myosin heavy chain
           2 protein.
          Length = 1947

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -3

Query: 297 VKKYRGTTRINCTSNFENSSKPFRSRLITIL 205
           ++ Y GT R NC +  E +  P    ++T++
Sbjct: 585 MRHYAGTVRYNCLNWLEKNKDPLNDTVVTVM 615


>U80029-11|AAB37590.1|  155|Caenorhabditis elegans Hypothetical
           protein T20D4.7 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +1

Query: 277 GPPVFFYFSGSKLPDGNSWCPDCVEAEPVVRHYLSELDKSIIFVYV 414
           G  V FYFS         WCP C    P+++ +  E+++    V+V
Sbjct: 39  GKLVGFYFSAH-------WCPPCRGFTPILKDFYEEVNEEFEIVFV 77


>AF068709-5|AAC19250.2|  332|Caenorhabditis elegans Serpentine
           receptor, class t protein29 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 331 WCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREY 435
           WC  C+ A  +V + L +L KS +   +  G+R Y
Sbjct: 119 WCCSCIIAMILVMNRLLDLSKSTLSTLIFEGNRTY 153


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,270,518
Number of Sequences: 27780
Number of extensions: 324561
Number of successful extensions: 752
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 751
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)