Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS00815
(692 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g42850.2 68418.m05223 expressed protein 68 5e-12
At5g42850.1 68418.m05222 expressed protein 68 5e-12
At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nea... 30 1.7
At3g56420.1 68416.m06275 thioredoxin family protein similar to t... 29 2.2
At4g26590.1 68417.m03833 oligopeptide transporter OPT family pro... 29 2.9
At5g06690.1 68418.m00756 thioredoxin family protein low similiar... 29 3.9
At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG ... 29 3.9
At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN) i... 29 3.9
At1g52650.1 68414.m05945 F-box family protein contains F-box dom... 28 5.1
At5g04260.1 68418.m00417 thioredoxin family protein low similari... 28 6.8
At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5) i... 27 8.9
>At5g42850.2 68418.m05223 expressed protein
Length = 134
Score = 68.1 bits (159), Expect = 5e-12
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 271 SRGPPVFFYFSGSKLPD-GNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDK 447
SR F F P G SWCPDCV AEPV+ L E + + + GDR W+
Sbjct: 26 SRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYKTLEEFPEEVKLIRAYAGDRPTWRTP 85
Query: 448 ECPFRTDSRSKLMVIPTLIK 507
P+R DSR KL +PTL++
Sbjct: 86 AHPWRVDSRFKLTGVPTLVR 105
>At5g42850.1 68418.m05222 expressed protein
Length = 134
Score = 68.1 bits (159), Expect = 5e-12
Identities = 33/80 (41%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Frame = +1
Query: 271 SRGPPVFFYFSGSKLPD-GNSWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDK 447
SR F F P G SWCPDCV AEPV+ L E + + + GDR W+
Sbjct: 26 SRSKINFILFLADNDPTTGQSWCPDCVRAEPVIYKTLEEFPEEVKLIRAYAGDRPTWRTP 85
Query: 448 ECPFRTDSRSKLMVIPTLIK 507
P+R DSR KL +PTL++
Sbjct: 86 AHPWRVDSRFKLTGVPTLVR 105
>At3g52850.1 68416.m05824 vacuolar sorting receptor, putative nearly
identical to vacuolar sorting receptor homolog
(GP:1737218) [Arabidopsis thaliana]
Length = 623
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
Frame = +1
Query: 376 LSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTL-IK*REYRGLKEASAAIG 552
L ++DK I DV + ++E SR + ++PTL + R+YRG E A +
Sbjct: 331 LKKVDKCIGDPEADVENPVLKAEQESQIGKGSRGDVTILPTLVVNNRQYRGKLEKGAVLK 390
Query: 553 NFC 561
C
Sbjct: 391 AMC 393
>At3g56420.1 68416.m06275 thioredoxin family protein similar to
thioredoxin [Nicotiana tabacum] GI:20047; contains Pfam
profile: PF00085 Thioredoxin
Length = 100
Score = 29.5 bits (63), Expect = 2.2
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 331 WCPDCVEAEPVVRHYLSELDKSIIFVYVDV 420
WC C + EPV R S S+IFV VDV
Sbjct: 19 WCVPCKKIEPVFRDLASRY-PSMIFVTVDV 47
>At4g26590.1 68417.m03833 oligopeptide transporter OPT family
protein similar to SP|P40900 Sexual differentiation
process protein isp4 {Schizosaccharomyces pombe};
contains Pfam profile PF03169: OPT oligopeptide
transporter protein
Length = 753
Score = 29.1 bits (62), Expect = 2.9
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = +2
Query: 200 LPKMVINLDLKGFEEFSKLLVQLI--LVVPLYFFTLAVQNYLMAIAGAPTAWKLNQSSGI 373
L + N+DL +E +SKL + ++ L+ L F TL +A+ W+L + + +
Sbjct: 349 LNQKTFNIDLPAYESYSKLYLSILFALIYGLSFGTLTATISHVALFDGKFIWELWKKATL 408
Query: 374 T 376
T
Sbjct: 409 T 409
>At5g06690.1 68418.m00756 thioredoxin family protein low similiarity
to SP|P34723 Thioredoxin {Penicillium chrysogenum};
contains Pfam profile: PF00085 Thioredoxin
Length = 210
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +1
Query: 328 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDV 420
SWC C+ +P + +E + F YVDV
Sbjct: 128 SWCRKCIYLKPKLEKLAAEYNNRAKFYYVDV 158
>At3g01460.1 68416.m00070 PHD finger family protein / methyl-CpG
binding domain-containing protein contains Pfam profiles
PF00628: PHD-finger (2 copies), PF01429: Methyl-CpG
binding domain
Length = 2176
Score = 28.7 bits (61), Expect = 3.9
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +1
Query: 310 KLPDGNSWCPDCVEAEPVVRHYL 378
++PDGN +CP CV A+ + + L
Sbjct: 1323 RIPDGNWYCPSCVIAKRMAQEAL 1345
>At1g19730.1 68414.m02465 thioredoxin H-type 4 (TRX-H-4) (GREN)
identical to SP|Q39239 Thioredoxin H-type 4 (TRX-H-4)
{Arabidopsis thaliana}
Length = 119
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +1
Query: 328 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGD 426
SWCP C P+ + S IF VDV +
Sbjct: 38 SWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDE 70
>At1g52650.1 68414.m05945 F-box family protein contains F-box domain
Pfam:PF00646
Length = 465
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -2
Query: 175 IFIYFLNTYKLPTVKLCIEKFMKILYRALGKIII 74
IF+ L T L +VKLC++KF AL ++++
Sbjct: 156 IFLPMLKTLVLHSVKLCVDKFFFRALPALEELVL 189
>At5g04260.1 68418.m00417 thioredoxin family protein low similarity
to SP|P29429 Thioredoxin. [Aspergillus nidulans]
{Emericella nidulans}; contains Pfam profile: PF00085
Thioredoxin
Length = 192
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/76 (26%), Positives = 35/76 (46%)
Frame = +1
Query: 328 SWCPDCVEAEPVVRHYLSELDKSIIFVYVDVGDREYWKDKECPFRTDSRSKLMVIPTLIK 507
+WC C+ +P + +E + F +VDV P+R SR+ + +PT+
Sbjct: 108 AWCRKCIYLKPKLEKLAAEFYPRLRFYHVDV--------NAVPYRLVSRAGVTKMPTIQL 159
Query: 508 *REYRGLKEASAAIGN 555
R+ G K+A G+
Sbjct: 160 WRD--GQKQAEVIGGH 173
>At2g35160.1 68415.m04313 SET domain-containing protein (SUVH5)
identical to SUVH5 [Arabidopsis thaliana] GI:13517751;
contains Pfam profiles PF00856: SET domain, PF05033:
Pre-SET motif, PF02182: YDG/SRA domain; identical to
cDNA SUVH5 (SUVH5) GI:13517750
Length = 794
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -3
Query: 441 LPIFSISNIDIDKNDTFVELTKVMPDDW 358
LPI +++N+D +K F+ K++ DW
Sbjct: 551 LPICAVNNLDDEKPPPFIYTAKMIYPDW 578
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,993,905
Number of Sequences: 28952
Number of extensions: 283964
Number of successful extensions: 694
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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