Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS00813
         (748 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    29   0.70 
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    27   2.8  
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    26   5.0  
SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|ch...    26   6.6  
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb...    26   6.6  

>SPBP19A11.04c |mor2|cps12|morphogenesis protein
           Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 29.1 bits (62), Expect = 0.70
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +3

Query: 567 NSRPKLVKSIQPFSSFSETNEQQFIF 644
           N+ P+LV+S++P+ S  + + Q+FIF
Sbjct: 917 NAFPQLVRSLKPYISVLKQDHQEFIF 942


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
 Frame = -2

Query: 336 LYNCFFIITT-QFTKLAFALLITMELCAFFPHPSCTFDYF 220
           LY  F  I+  Q T L F LLI+  +    P P   F YF
Sbjct: 350 LYYFFLDISKLQMTSLTFFLLISTTILTLVPAPLVEFRYF 389


>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/45 (26%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -2

Query: 498 TILFFL*CVPRR--TDSFCLF*VYFIQKLRSFVYRLRHYEVCRVS 370
           T++++L   P    T + C+F ++F+   R+     RH   C +S
Sbjct: 324 TLMYYLIIAPTLLITSAICMFTIFFVPCARTLWAICRHLRTCPLS 368


>SPAC1399.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 589

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -2

Query: 495 ILFFL*CVPRRTDSFCLF 442
           ++FFL  VP+ T SFC+F
Sbjct: 261 LIFFLNLVPKPTVSFCVF 278


>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 840

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 254 NAHSSIVMRRAKASFVNWVVIIKKQL*SEKTTSILI 361
           NA  S+ + +  AS  +W+ +I K L +   TSI++
Sbjct: 199 NAVESVFVTKTAASVPSWIKVITKILGAAVVTSIVL 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,757,722
Number of Sequences: 5004
Number of extensions: 54877
Number of successful extensions: 134
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)